Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6620 ATGGAGTCAGATCTTCATCAACAACAACAACCACAGGTTAATTCTTCAGGTTTAACTCGGTATCGTTCAGCACCAAGTTCATATTTCAACAACATCATCGACAAAGAATTCTACGAACATGTTTTTAATCGACCTTCAAGTCCAGAAACAGAGCGTGTTTTTTCAAGGTTTATGAACAGTTTAGGTTCAGAAGAAGATTTACTCACTCAGAAAATCTCAGTTGAATCTACGGTAAAAGAAGAGGAAGAGATTCTTAATGTTAACATTAACCAACAAGAACAAGAACGAGAACAAGAACAAATGATTCATCATCATCAGAGTAATAACTATGAACACAACCCTGTTTCTTCTCATGGTTTTTATCAAACCTCAGTGATGCCACCTTTGCCAAACCAGAATGTTGTTTCTGGTTTGGATGGAAGTTTTTCAATGGGAGTTAATAGGTTACAGCAGATGAAGAGTCATAGTGGAAATAATTCTAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATCAACATTGAAAATGGGTATGTTAGTATGAGAGGAATGGGAAATTTAGGAGCGGTTAATAGTTCTATGAAAGATGCAAAATTTTCTTCTGGAAGGAGTTTGAAGAATTCAGCACACTATTCATCAGGGGTAATGTCAACAATAGCTGAAGTTGGGGACAAATGCAATGAAGAAAATAATTTAGAAAGTGAAGTTTTTGGTGAAAGTCACGGTAACGATTATATCGTGGATTATCAGGTTGTTGATACTTGGGATGATACCGAAATGATGTCTGAAAATGTTGGTGGTTTGAAAAGATTTAGAGATAGTGATTCAAAACAACAATTTTCTGCAGGTTTTAATGCAGCTGCAGTTCAGAATGAAACAGGAGGAGGGCATTCATCTTCTCCATTGGCTCATCAATTGAGTATGCCTAATACTTCATCTGAAATGGCAGCTATTGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGCGCTAAGCGTGGTTGTGCTACTCACCCGAGAAGCATAGCAGAAAGGGTTAGAAGGACTAAAATTAGTGAACGCATGAGGAAGCTACAAGATCTCGTCCCAAACATGGATAAGCAAACAAATACAGCAGATATGTTAGACTTGGCTGTGGATTACATCAAAGATCTTCAAAAGCAAGCTCAGAAGCTTCAAGATTGTCAAGCAAAGTGCACTTGCTCACACAAGAAGCAACAATAA 1245 0.3719 MESDLHQQQQPQVNSSGLTRYRSAPSSYFNNIIDKEFYEHVFNRPSSPETERVFSRFMNSLGSEEDLLTQKISVESTVKEEEEILNVNINQQEQEREQEQMIHHHQSNNYEHNPVSSHGFYQTSVMPPLPNQNVVSGLDGSFSMGVNRLQQMKSHSGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGNLGAVNSSMKDAKFSSGRSLKNSAHYSSGVMSTIAEVGDKCNEENNLESEVFGESHGNDYIVDYQVVDTWDDTEMMSENVGGLKRFRDSDSKQQFSAGFNAAAVQNETGGGHSSSPLAHQLSMPNTSSEMAAIEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQKLQDCQAKCTCSHKKQQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6620 414 CDD bHLH_AtbHLH_like 347 400 IPR045239 -
Psa5g6620 414 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Psa5g6620 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 6 411 - -
Psa5g6620 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 6 411 - -
Psa5g6620 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 404 IPR036638 GO:0046983
Psa5g6620 414 Gene3D - 343 414 IPR036638 GO:0046983
Psa5g6620 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Psa5g6620 414 SMART finulus 348 398 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6620 Psa-Chr5 554419836 554422079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6620 6 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 39.759 3.23e-72 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6620 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6620 - - gmx:100806368 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6620 5 554419836 554422079 Psa5g6620 5 554419836 554422079 ECH
Psa5g6620 5 554419836 554422079 Psa7g4889 7 427651973 427655215 ECH
Psa3g1642 3 146998688 147000712 Psa5g6620 5 554419836 554422079 ECH