Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6611 ATGAACTCAAACAACTGGCTTTCATTTCCACTTTCTCCAACTCACCCTTCCTCAGTACCACCTCAACCTTATCAACATCATTTCTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAATCATGATTGGAATCTGATGAATACTCACACTAGCAATGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAACAGCAAGAGTACTACTGAAAATGAGTCAGATCTTGCAGCCTTTAATCAAATTAACGATCATTCTTCAGATAACTACTTCTTCATGCCACTACAAAGCAACTCAGCGTTAGAACCAACTTCTAGCAATAGCTATGATCAATATCAAGAAAATGGTACCAATAACTTGCAATCATTGACATTATCAATGGGGAGAGGTACTAAAGATTCCACATGTGAAACCGATAATAATAACACTATAGTTGAAGCAGCTGCACCTAAAAGAGCTTTGGACACCTTTGGCCAAAGAACATCAATATATCGCGGTGTAACAAGACATAGATGGACCGGAAGATATGAAGCTCATCTTTGGGATAATACTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTAGGTGGTTACGACAAAGAAGAGAAAGCGGCGAGGGCTTATGATTTAGCTGCATTGAAGTACTGGGGAACATCCACCACAACAAACTTTCCGATGAGTAACTATGAGAAGGAAGTTGAAGAAATGAAGAACATGACAAGACAAGAATTTGTTGCATCCATAAGAAGAAAAAGCAGCGGATTTTCAAGGGGTGCGTCAATGTACCGTGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGAATCGGTAGAGTTGCAGGGAACAAAGATCTTTACTTAGGAACATTCAGCACTGAAGAAGAAGCTGCGGAAGCTTATGATATAGCTGCAATTAAGTTCAGAGGATTAAGCGCGGTAACAAACTTCGACATGAATCGTTACGACGTGAAAGCGATTCTCGAAAGTAATACTCTTCCAATAGGAGGAGGTGCTGCAAAACGGTTGAAAGAAGCACAAGCTCTAGAATGTTCTAGAAAAAGGGAACAAGAGATGATAGCACTTCAATATGGACTAGGAGGATCTTCAAGTTCAAGTAGGTTAGAATTACAAGGTTACCCTTTAATGCAATTTGAACAACAACAACAACAACCTTTGTTAACACTACAAAACCAGGAACTATATACGTCGTCGTTTCATGATCAGAGTTATATACAAACTCAGCTTCAGTTGCATCAGCAGCAACAAAGTGGTTTTTACAACTACAATGGTGATTATAGTATTCAGAATCACCCGGGTTTGATGGAGAATGATGGTGGTGGAGGGTATATTGGGAATAATAACAATGTTATGGGGGGAACAGCGGATTACGACATGTCTTCCGGAGGTTATGGAGGTTGGTCGGCGGGAGATTCCATGCAAGCTTCAAATGGAGGTGGTGGTGTTTTCACAATGTGGAATGGTTTGAGTAATTAA 1524 0.4042 MNSNNWLSFPLSPTHPSSVPPQPYQHHFSLGTLVNDNMLETPFQNHDWNLMNTHTSNEVPKVADFLGVNSKSTTENESDLAAFNQINDHSSDNYFFMPLQSNSALEPTSSNSYDQYQENGTNNLQSLTLSMGRGTKDSTCETDNNNTIVEAAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPMSNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLSAVTNFDMNRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREQEMIALQYGLGGSSSSSRLELQGYPLMQFEQQQQQPLLTLQNQELYTSSFHDQSYIQTQLQLHQQQQSGFYNYNGDYSIQNHPGLMENDGGGGYIGNNNNVMGGTADYDMSSGGYGGWSAGDSMQASNGGGGVFTMWNGLSN* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6611 507 ProSiteProfiles AP2/ERF domain profile. 269 327 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 481 - -
Psa5g6611 507 Gene3D AP2/ERF domain 269 329 IPR036955 GO:0003700|GO:0006355
Psa5g6611 507 Gene3D AP2/ERF domain 167 235 IPR036955 GO:0003700|GO:0006355
Psa5g6611 507 SMART rav1_2 269 333 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 SMART rav1_2 167 239 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 CDD AP2 166 235 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 481 - -
Psa5g6611 507 SUPERFAMILY DNA-binding domain 268 328 IPR016177 GO:0003677
Psa5g6611 507 ProSiteProfiles AP2/ERF domain profile. 167 233 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 CDD AP2 268 327 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 Pfam AP2 domain 270 319 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 Pfam AP2 domain 167 225 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 PRINTS Ethylene responsive element binding protein signature 168 179 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 PRINTS Ethylene responsive element binding protein signature 309 329 IPR001471 GO:0003700|GO:0006355
Psa5g6611 507 SUPERFAMILY DNA-binding domain 166 235 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6611 Psa-Chr5 553926346 553928915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6611 1 503 AP2-EREBP Transcription Factor Family AT1G51190 61.419 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Psa5g6611 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6611 K09285 - gmx:100788471 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6611 5 553926346 553928915 Psa5g6611 5 553926346 553928915 ECH