Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6606 ATGGATTCTACTGAAGAACAAGAACTCAAACTCAACCTCAACAACCTTAAAGCACTCAAAATCTTAGGTAAAGGAGCAATGGGAACCGTTTTCCTCGTTCAACAAAACAACTCCTACATGGCACTCAAAGTTGTTGATAAAACCTCAACTCACGATGCCGAGCGTCGAGCCCGTTGGGAAACCCAAGTGTTATCAACTTTAGCTCATCCATTTCTCCCTTCCCTCCTGGGCTTTTTCGAAACGGACCGGTTGTTGGCTTGGTCCGTTCCGTATTGCCCAGGAGGCGATCTTAACGTCCTCCGTCACCACCAAACAGATCGCGTGTTTTCCACAACCGTAATCCGCTTCTACTTAGCAGAGATTCTCTGCGCTCTCGACCACCTTCATTCCATGGGTATCGCTTATCGTGACCTTAAACCCGAAAACGTACTCATTCAGCAATCAGGCCACGTCACGTTAACTGATTTCGATCTCTCGCGGAAACTCTCTCACAAAACGGTTAAAATCAAAACTCTCATTTCACTTGAGGATAACAGAATCCGTGAATCTCGCCGCAAAACTCGGAAATGGAGAGTCCCGCTTACCGAGGCTAACGGCAAGATCGCAAGAGTTAGTCCGGTGGTGCGACGGGGTCTGAGTTTCTCTGACGGTGAACGGTCTAACTCGTTTGTCGGTACGACGGAATACGTCGCTCCGGAGGTTGTTCGCGGTGACGGACATGAGTTTGCGGTTGATTGGTGGGCGCTTGGAGTTTTGACATACGAGATGATGTACGGGAAAACGCCGTTTAAGGGGAAGAACAAGAAGGAAACGTTTAGGAACGTGCTTTTCAAGTCGCCGGAGTTTGTTGGAAGGAAAACGGCGTTAACGGATCTTATAGAACGGTTGCTTGAGAAGGATCCTTTGAAGAGATTAGGTTACGTTGGTGGTGCTAGTGAGATTAAGCAGCATGAGTTTTTCAGAGGAGTTAAGTGGGAGATGTTAACGGAAGTTGTTCGGCCGCCGTTTATTCCGTCAAGAGATGAAAGTTTTTTCACGGCGGATAAATTTGCAGAGGGAGTGAATATAAATGAATACTTTGAAAAAATGAAGTCTCCGCCGTCGTTGCCAGCTTCGCCGTTACGGTCACCGTCGTCTGAGTTTCGGAATAGTGTTTCTTTTGCAGAGTTCTGA 1173 0.4731 MDSTEEQELKLNLNNLKALKILGKGAMGTVFLVQQNNSYMALKVVDKTSTHDAERRARWETQVLSTLAHPFLPSLLGFFETDRLLAWSVPYCPGGDLNVLRHHQTDRVFSTTVIRFYLAEILCALDHLHSMGIAYRDLKPENVLIQQSGHVTLTDFDLSRKLSHKTVKIKTLISLEDNRIRESRRKTRKWRVPLTEANGKIARVSPVVRRGLSFSDGERSNSFVGTTEYVAPEVVRGDGHEFAVDWWALGVLTYEMMYGKTPFKGKNKKETFRNVLFKSPEFVGRKTALTDLIERLLEKDPLKRLGYVGGASEIKQHEFFRGVKWEMLTEVVRPPFIPSRDESFFTADKFAEGVNINEYFEKMKSPPSLPASPLRSPSSEFRNSVSFAEF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6606 390 Gene3D Phosphorylase Kinase; domain 1 16 95 - -
Psa5g6606 390 Gene3D Transferase(Phosphotransferase) domain 1 217 339 - -
Psa5g6606 390 ProSiteProfiles Protein kinase domain profile. 16 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6606 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Psa5g6606 390 MobiDBLite consensus disorder prediction 366 390 - -
Psa5g6606 390 ProSiteProfiles AGC-kinase C-terminal domain profile. 321 390 IPR000961 GO:0004674|GO:0005524|GO:0006468
Psa5g6606 390 Gene3D Transferase(Phosphotransferase) domain 1 96 166 - -
Psa5g6606 390 MobiDBLite consensus disorder prediction 374 390 - -
Psa5g6606 390 PANTHER FLIPPASE KINASE 1-RELATED 11 367 - -
Psa5g6606 390 SMART serkin_6 16 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6606 390 ProSitePatterns Protein kinases ATP-binding region signature. 22 43 IPR017441 GO:0005524
Psa5g6606 390 SUPERFAMILY Protein kinase-like (PK-like) 13 379 IPR011009 -
Psa5g6606 390 PANTHER SERINE/THREONINE-PROTEIN KINASE UCNL 11 367 - -
Psa5g6606 390 Pfam Protein kinase domain 216 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6606 390 Pfam Protein kinase domain 18 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6606 Psa-Chr5 553797018 553798915 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6606 11 367 AGC Kinase Gene Family AT1G51170 60.267 2.04e-153 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa5g6606 Pkinase 9.7e-34 CL0016