Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6600 ATGGACCATGACCAGACTGGATGCGAAGCAGCCCCTGAAGGTCCTATGCTGTGCGTCAACAACTGTGGATTTTTCGGAAGCGCATCTACCATGAACATGTGCTCTAAGTGCCACAAAGACATGATGCTGAAACAGGAGCAGGCAACACTTGCAGCATCTTCCATTGGGAACATTATGAATGGTTCATCAAGCAGCAGTGGAATTGAACCCGCTATTGCCGCCAATGTGGAAATCTCAGTTGATTCAGTGGAGCCCAAAACCATCTCTGCACAACCGTTAGTTGCTTCCGGCTCAGAGGAGAGTCTGGAGAAGAAGCCCAAGGATGGTCCTAAACGGTGCACCAACTGCAATAAGCGGGTTGGTTTGACAGGATTTAATTGTCGATGCGGTAACCTTTTCTGTGCTGTACATCGCTACTCAGACAAGCATGACTGTCCATTTGACTACCGCACTGCCGGACGGGATGCGATAGCCAAAGCAAACCCGGTTGTCAAAGCTGAGAAGCTTGACAAGATATAG 519 0.4913 MDHDQTGCEAAPEGPMLCVNNCGFFGSASTMNMCSKCHKDMMLKQEQATLAASSIGNIMNGSSSSSGIEPAIAANVEISVDSVEPKTISAQPLVASGSEESLEKKPKDGPKRCTNCNKRVGLTGFNCRCGNLFCAVHRYSDKHDCPFDYRTAGRDAIAKANPVVKAEKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6600 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Psa5g6600 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Psa5g6600 172 SUPERFAMILY AN1-like Zinc finger 98 167 IPR035896 -
Psa5g6600 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Psa5g6600 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Psa5g6600 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Psa5g6600 172 Gene3D - 88 168 IPR035896 -
Psa5g6600 172 PANTHER ZINC FINGER AN1 DOMAIN STRESS-ASSOCIATED PROTEIN 1 172 - -
Psa5g6600 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 172 - -
Psa5g6600 172 Pfam AN1-like Zinc finger 113 149 IPR000058 GO:0008270
Psa5g6600 172 Gene3D - 3 66 - -
Psa5g6600 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6600 Psa-Chr5 553453786 553454304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6600 11 172 C2H2 Transcription Factor Family AT3G52800 44.706 5.10e-40 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6600 - - gmx:100781607 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6600 5 553453786 553454304 Psa5g6600 5 553453786 553454304 ECH
Psa3g1658 3 147961274 147964022 Psa5g6600 5 553453786 553454304 ECH