Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6593 ATGAATTCTCAACCCTACTTCTCCAACAACTTCAATGGTTATTATTTTGACCTAAATAACCCTCCATTCTATAATTTTCCATCTAGTTACCACCATCAAAACAACATATCTTTTTCATCTCCATCTCCACCACCTAGAGAAGCTCTTCCTTTACTTAACCTAAACCCTACAAAACATGAAGATCTTCTTCTAGAATCCTCCTTAAGTTCCATGGAAATGATGAACATGAAAGAGAAAGAACAACTAAGTATATCATCCAATTCTCTAGACGATGTTCATGATGCTGTTACTGTTGCTTTACATCTAGGGCTTCCAACTATAACTTCATCTGATTTGGTTTCAGAGAAAGAAGATGATGATGAAAAAGTTGTTACTGTTGCTTCTGAGTGTCCACCGAGTAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTTATTGGTCCTACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTAAGAGGAACACAACCAACAGCCATGTTAAGACTCCCATGTTATTGTTGTGCATCAGGGTGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCCTTCATGTGTAGAAAGTGCTGCAAAGCATTTGCAGTGAGAGGTGATTGGAGAACTCATGAGAAAAACTGTGGTAAGCTTTGGTATTGTTGTTGTGGGTCAGATTTTAAACACAAAAGATCACTTAAAGATCATATAAAGGCATTTGGGAATGGACATAAAGCTTATGGAATTGATGATCAAGATGGCTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 939 0.3717 MNSQPYFSNNFNGYYFDLNNPPFYNFPSSYHHQNNISFSSPSPPPREALPLLNLNPTKHEDLLLESSLSSMEMMNMKEKEQLSISSNSLDDVHDAVTVALHLGLPTITSSDLVSEKEDDDEKVVTVASECPPSKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCASGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDDQDGSEIEQENESFQS* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6593 312 Gene3D Classic Zinc Finger 154 177 - -
Psa5g6593 312 SUPERFAMILY beta-beta-alpha zinc fingers 221 259 IPR036236 -
Psa5g6593 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 182 IPR013087 -
Psa5g6593 312 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 28 311 - -
Psa5g6593 312 Gene3D Classic Zinc Finger 197 291 - -
Psa5g6593 312 ProSitePatterns Zinc finger C2H2 type domain signature. 157 177 IPR013087 -
Psa5g6593 312 PANTHER ZINC FINGER PROTEIN WIP2 28 311 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6593 Psa-Chr5 553257367 553260329 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6593 46 312 C2H2 Transcription Factor Family AT3G57670 60.815 2.09e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g6593 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6593 - - gmx:100801922 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6593 5 553257367 553260329 Psa5g6593 5 553257367 553260329 ECH