Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6580 ATGGCAACAACCTATCACCAACCCACTACAATAGAAGAAGTCCGAACCCTATGGATTGGGGATTTACAATACTGGGTCGACGAAAACTACCTCACAAACTGTTTCTCTCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGTCAACCAGAAGGTTACGGTTTCGTCGAATTCGTTTCTCACGCCGCAGCAGAACGAGTTCTTCAAAGCTACAACGGAACTCAAATGCCGGGAACCGAACAAACCTTCCGGTTAAACTGGGCTTCGTTCGGTATCGGTGAACGCCGTCCTGATGCCGGTCCCGATCACTCGATTTTCGTTGGGGATCTTGCTCCTGATGTTACTGATTATCTTTTGCAAGAGACTTTTCGAACTCATTATAGTTCCGTTCGCGGTGCCAAGGTTGTGACTGACCCGAATACGGGGCGTTCTAAGGGTTATGGTTTTGTTAAATTTGCTGATGAGAGTGAAAGGAATCGTGCTATGTCTGAAATGAATGGTGTTTATTGTTCTACTAGACCGATGAGAATTAGTGCTGCTACGCCTAAGAAAACTACTGCTTATCCACAGAATCCTTATGCTGCTGTTGCTGCCGCTGTTGTTGCTCCTGCACCTGCTCCTAAAGCAATATATCCAGTTCCAGCATACACCGCCCCAGTGAATACAGTTCCACCAGAGTATGATGCAAACAATACTACCGTTTATGTTGGTAATTTGGATCTTAATGTCTCAGAGGAGGAGCTGAAGCAAAACTTTCTGCAATTCGGAGAGGTTATTTCTGTCAAAGTACATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGGTCCGAGTTTCTTGGGGTAGGCCCCTAACAGCTAGACAGGACTTACCTGGTGCCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAACAGGGTTATGAAGGTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCCGGATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGTCCAAGATGTATCAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTACGATCCTCTCGCAATGCCCGATGTTGATAAGTTAAATGCTGCCTATCTCTCAGTACATGGAAATGCCATTTTAGGGCGGTCTCTCTGGCACAAAACCTCATCCTTGCAGCAAGCTTAA 1287 0.4631 MATTYHQPTTIEEVRTLWIGDLQYWVDENYLTNCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYPQNPYAAVAAAVVAPAPAPKAIYPVPAYTAPVNTVPPEYDANNTTVYVGNLDLNVSEEELKQNFLQFGEVISVKVHPGKACGFVQFGARASAEEAIQKMQGKIIGQQVVRVSWGRPLTARQDLPGAWGQQVDQSQWSAYYGYGQQGYEGYAYGAAQDPSMYAYAGYAGYAQYPQQVEGVQDVSAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTSSLQQA* 429
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6580 428 CDD RRM2_SECp43_like 107 186 - -
Psa5g6580 428 SMART rrm1_1 16 91 IPR000504 GO:0003723
Psa5g6580 428 SMART rrm1_1 238 305 IPR000504 GO:0003723
Psa5g6580 428 SMART rrm1_1 109 183 IPR000504 GO:0003723
Psa5g6580 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 302 IPR000504 GO:0003723
Psa5g6580 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Psa5g6580 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Psa5g6580 428 Gene3D - 97 196 IPR012677 -
Psa5g6580 428 SUPERFAMILY RNA-binding domain, RBD 216 338 IPR035979 GO:0003676
Psa5g6580 428 Gene3D - 14 94 IPR012677 -
Psa5g6580 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 309 IPR000504 GO:0003723
Psa5g6580 428 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 6 368 - -
Psa5g6580 428 Gene3D - 223 314 IPR012677 -
Psa5g6580 428 SUPERFAMILY RNA-binding domain, RBD 101 197 IPR035979 GO:0003676
Psa5g6580 428 CDD RRM1_SECp43_like 16 96 - -
Psa5g6580 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Psa5g6580 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Psa5g6580 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 6 368 - -
Psa5g6580 428 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Psa5g6580 Psa-Chr5 552751580 552756610 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6580 16 315 Eukaryotic Initiation Factors Gene Family AT1G22760 25.902 6.49e-24 102
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6580 - - cam:101496574 741.495
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6580 5 552751580 552756610 Psa5g6580 5 552751580 552756610 ECH