Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6557 ATGAGAAAGCCAGAGACTTTTACGAAAAAGACCGATATCATTAAGAAGAAGCTTAGGAAAGGTTTGTGGTCACCGGAAGAAGATGAGAAGCTTATGAACTACATGGTAAGGAATAATGGACAAGGTTGTTGGAGTGATGTAGCAAGAAATGCTGGATTGGAAAGGTGCGGCAAAAGTTGTAGATTAAGATGGATTAATTACTTGAGACCTGATCTTAAAAGAGGTGCTTTTTCAAATCAAGAAGAAGAACTCATCATTCATTTGCATTCCCTTCTCGGAAACAGATGGTCGCAAATAGCAGCACGTTTACCCGGGAGAACAGACAATGAGATAAAAAACTTTTGGAATTCAACCATAAAGAAAAGGCTCAAGAGCATGTCTTCTACTACGACAACAACCTCAACTTCACCGAATGCAAGCGATGAATCGTCCTCGCCCGAGACTAACAAAGAGATCAATATACTAGGGTTTTCTGGACAATATCATCAACATGCAAATTTCAACAACTACAGGATGAATGTGCCTATCTTCGCTTCATTGTCTCCTTCGCCGAACACAATTTTCAATACTGCGAATATTGACACATTGCCTATGCTGCAGCATAGTGGATACTTAAACACTGCATTTACACTGCCATGCTTTTCACAAAGTCATCAAGTTGATATTAAAGATTGTTATTTTGAAAATGGTGGAGTACACGGGAATGTGTGCAAGAGTGAGAATGTCAGTATTGATTATGCTTTTGATGAGATGAACAATATTCTTAGTAACTGCAATATTATTGACAGCAATAATGATAATAAAAGTGGGGTAGTGGAGAATTTATTTCAAGAACAATTGAACTTTGGAGAGTGGGATTTTGAGGAGTTGATGAAAGATGTTTCCTCTTTTACTTCTTTTGATTATTCATTCTGA 915 0.3749 MRKPETFTKKTDIIKKKLRKGLWSPEEDEKLMNYMVRNNGQGCWSDVARNAGLERCGKSCRLRWINYLRPDLKRGAFSNQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKSMSSTTTTTSTSPNASDESSSPETNKEINILGFSGQYHQHANFNNYRMNVPIFASLSPSPNTIFNTANIDTLPMLQHSGYLNTAFTLPCFSQSHQVDIKDCYFENGGVHGNVCKSENVSIDYAFDEMNNILSNCNIIDSNNDNKSGVVENLFQEQLNFGEWDFEELMKDVSSFTSFDYSF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6557 304 CDD SANT 76 116 IPR001005 -
Psa5g6557 304 Gene3D - 76 151 - -
Psa5g6557 304 PANTHER MYB DOMAIN PROTEIN 55 11 303 - -
Psa5g6557 304 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Psa5g6557 304 CDD SANT 23 68 IPR001005 -
Psa5g6557 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 68 IPR017930 -
Psa5g6557 304 SMART sant 73 121 IPR001005 -
Psa5g6557 304 SMART sant 19 70 IPR001005 -
Psa5g6557 304 MobiDBLite consensus disorder prediction 125 148 - -
Psa5g6557 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Psa5g6557 304 Gene3D - 17 74 - -
Psa5g6557 304 Pfam Myb-like DNA-binding domain 20 68 IPR001005 -
Psa5g6557 304 Pfam Myb-like DNA-binding domain 74 117 IPR001005 -
Psa5g6557 304 SUPERFAMILY Homeodomain-like 18 115 IPR009057 -
Psa5g6557 304 ProSiteProfiles Myb-like domain profile. 15 68 IPR001005 -
Psa5g6557 304 PANTHER MYB TRANSCRIPTION FACTOR 11 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6557 Psa-Chr5 552211974 552213520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6557 1 129 MYB Transcription Factor Family AT5G12870 79.845 8.39e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6557 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6557 K09422 - gmx:100786151 305.064