Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6555 ATGAACTCGGACACGCTTCCCTCTTCCACGGCGTCGTTTTGGTGCTATAGTTGCACACGTTTCGTTCACCTTTTGGATCATAACGACGTCGTTTGTCCGCACTGTACAAGCGGTTTTGTGGAAGAGATTCACGCTGGTAACTCTCCGGCAGTTTCCTTATTTGCCGACGGAATTCATTCTTCGAGGAGACAAAACTCCCGCCGGAGACGTCGCAACGCTGGCAATAGATCGCCTTTTAATCCTGTAATCGTGCTTCGCGGACCTAGGGAGGACGGCGGCGGTGGCGGTGAAAGCGAGGGGAGTAGCTTTGAATTGTATTATGAAGACGGCAACGGTGCCGATCTACGTCCGCTTCCGCCTAATATGTCCGAACTATTGCTTGGTTCCGGCTTCGATCGGTTGCTTGAGCAATTCTCTCAGATCGAAATCAACGGTTTCGGTAGGGCGGAGAATCCGCCGGCGTCAAAGGCGGCGATAGAGTCAATACCAACGGTTGATATCACCGACGCAGAGGTAGAAGAAGAAACGCACTGTGCGGTTTGCAAGGAAGCATTCGAGCTTGGTTCAGAGGCGCGTAAGATGCCGTGCAAGCACCTTTACCATTCTGATTGCATTCTCCCATGGCTGTCTATGCGAAATTCGTGCCCGGTCTGCCGCCACGAGTTACCTTCCGATCAAAGCCAAAATCCCTCGGAGACTAGATTATCTGGTCAGACTGACGAAGAAGCGGTTGGATTGACGATATGGAGATTACCTGGAGGCGGATTCGCCGTCGGGAGATTCACCGGTGGTCGGAGAGCCGGTGAGATTCAGTTACCGGTTGTTTACACAGAGATGGACGGCGGTAATAACTCTAACGAAGATTCTAGAAGCATCTCTTTGGCAGTGGGAAGCAATAGAGTTAGAGAGAGACGTGGAATTCGCAGAATTTTTCGAAATTTTCTATCCTTTTTTGGTTCCGTTAATTTAAACCGTAGCTTTTCTGGTTCTGGTTCATTGTTTAGTAGAAGTTCACGGAGAAGAAGCAGAACTTGGGTCACGGAATAA 1047 0.4995 MNSDTLPSSTASFWCYSCTRFVHLLDHNDVVCPHCTSGFVEEIHAGNSPAVSLFADGIHSSRRQNSRRRRRNAGNRSPFNPVIVLRGPREDGGGGGESEGSSFELYYEDGNGADLRPLPPNMSELLLGSGFDRLLEQFSQIEINGFGRAENPPASKAAIESIPTVDITDAEVEEETHCAVCKEAFELGSEARKMPCKHLYHSDCILPWLSMRNSCPVCRHELPSDQSQNPSETRLSGQTDEEAVGLTIWRLPGGGFAVGRFTGGRRAGEIQLPVVYTEMDGGNNSNEDSRSISLAVGSNRVRERRGIRRIFRNFLSFFGSVNLNRSFSGSGSLFSRSSRRRSRTWVTE* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6555 348 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Psa5g6555 348 MobiDBLite consensus disorder prediction 58 100 - -
Psa5g6555 348 Pfam zinc-ribbon 12 43 IPR039525 GO:0061630
Psa5g6555 348 Pfam Protein of unknown function (DUF1117) 244 341 IPR010543 -
Psa5g6555 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Psa5g6555 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 305 - -
Psa5g6555 348 SUPERFAMILY RING/U-box 158 229 - -
Psa5g6555 348 Pfam Ring finger domain 177 219 IPR001841 -
Psa5g6555 348 PANTHER OS05G0110000 PROTEIN 8 305 - -
Psa5g6555 348 SMART ring_2 178 218 IPR001841 -
Psa5g6555 348 CDD RING-H2_RNF126_like 178 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6555 Psa-Chr5 551969765 551971878 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6555 114 225 C3H Transcription Factor Family AT5G01980 45.536 2.77e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6555 - - aip:107612938 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6555 5 551969765 551971878 Psa5g6555 5 551969765 551971878 ECH
Psa5g6555 5 551969765 551971878 Psa7g4820 7 418476116 418479398 PCT