Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6550 ATGGATCCAAACTTTGAAACCACCTTCAAATTCGACGACAATGGTAACTTACTCTTTCTCGATGATCCAATTCCAACCACTGATTCTTTTTTCTATCAACCTCATGTGCCTCCGAGTTCTTCCAATTCTAACTCGGACCCACTCGTTTCACCCACCACTCATTCTTCCATTGAAGACACCGATTTTTCAGAAACAGTAAAATACATAAGTCAGATTCTCATGGAAGAGGACTTTCAACAAAAACCTTGCATGTGTTATGATCCACTTAGTCTCCAGCATACTGAGAAAATTTTCTTTGATGCTTTGGATTCTAAACTGCCTCTTTCACCTAATCAACACCCTCTTGATGTTATTGAAATTCCTGATATGAATTGTTCGGCTACTGATTCTGGTAACAGTTCTGGCTCTAGTGAGTTGAAGCCTCTTTCTCCTGATACACCGGTTTCAGGTGATTCTGCTTTTGATTCAGTTTCTTATGTGAAGTCTCAATTTGTTGGTTTGAAAAGTGATAGCAATAATAATATTAGTGATGGTGTTTTTGATTTGGATTTTTCTGAGACAAAGCTTATGGCTCAGAATATTTTTAGTGATGCTGATTCTATGTTACAGTTTAGAAAAGGGTTGGAGGAAGCTAGTAAGTTTCTTCCTCAAAAGCCTCAGCTTTTTACTGGTTTTGAGAGTGCTAAGACTAGTTTAGCCTCACAAGAGGCTAAGGGGAGAGTGGGAGTTATAAAGATGGAGGATAGTGTTAGGGAGAATTCGAGTTCGAGTTATTCGAGTAATTTGAGTTCATATGGTTTGTTGAAGAGTAGGAAGAATCACGAGCGTCAAGGTAGCGATGATGAAGAAGGGAGGAGTAACAAACAATCTGCGGTTCGTGTTGAGGAAAGTGAAATATCTGAGATGTTTGATAGGGTTTTGCTTAGTGTTGAAAATGTGCCGCTGTGTGCTGAACAAAAGGATGGATCGGTGATGGAGAGTAGCACACAGGTTGGTGAGCTTGATGGAGGGAAGTCGCGTTCGAAGAAACAAGGGAGGAAGAGGGAAAATGTGGATTTGAGGACTCTTTTGGTTCTTTGCGCACAAGCTGTGTCTGGAAATGATAACCGGACTGCGAATGAATTGTTTAAGCAGATTAGGCAGCATTCTTCTCCTTCAGGTGATGCTTCTCAGAGGTTGGCTCATTACTATGCGAATGCGATTGAAGCACGCATGGTTGGTGCCGGTACTGGTACACAAATATTATATATGAGCCAAAAGATGATTAATGCTGCTGATTACTTGAAAGCATACCAAGTTTTTATATCTGTTTGTCCTTATAAAAAATTTGCGCATTTCTTTGCAAATAAGATGATACTGAAAACAGCTGAAACGGCGGAAACACTTCACATTATTGATTTTGGTATCTTATATGGTTTCCAGTGGCCAATTCTTATCAAGTTTCTGTCAGAAAGAGTTGGTGGACCTCCCAAGCTTCGCATCACCGGAATAGAGTATCCCCAAGCTGGCTTTCGACCGGCTGAAAGAATCGAGGAAACTGGCCGGCGTTTAGCTAACTATTGTCAGCGTTTCAATGTTTCCTTTGAATACAAGGCCGTACCATCGCGAAACTGGGAAACCATTCAAGTTCAAGACCTTAATATTAAGAGCAACGAGGTAGTTGCGGTGAACTGTCTGATAAGGTTTAAGAATTTACATGATGAGACAATTGAAGTGAACAGTCCTAAAGACGCAGTTCTGAAGTTAATCAGGAAGATAAACCCAAGTATATTTGTTCAGTCTATAGTAAATGGATCTTACAATGCCCCTTTCTTTGCCACGCGTTTCAAGGAGTCGCTTTTCCATTATTCTGCAATGTATGATATGTTTGACACTCTCATACCCCGTAAAAACGAATGGAGGCTGACGATTGAGAGAGAGCTTTTGGGTCGGGAGATTATGAACGTTGTAGCATGTGAAGGTTTTGAGAGGGTTGAGAGGCCCGAGTCATACAAACAGTGGCAGGTTAGGAATCTACGGGCCGGTCTTAGGCAGCTCCCACTTGATAAGGAGATAATGGTCAAATTTAGAGGTAAGCTAAGAGAATGGTACCATAAAGATTTTGTCTTTGATGAAGATAACAACTGGATGCTTCAAGGTTGGAAAGGCCGCATTTTATATGCATCGGCTTGTTGGGTGCCAGCATAA 2187 0.4102 MDPNFETTFKFDDNGNLLFLDDPIPTTDSFFYQPHVPPSSSNSNSDPLVSPTTHSSIEDTDFSETVKYISQILMEEDFQQKPCMCYDPLSLQHTEKIFFDALDSKLPLSPNQHPLDVIEIPDMNCSATDSGNSSGSSELKPLSPDTPVSGDSAFDSVSYVKSQFVGLKSDSNNNISDGVFDLDFSETKLMAQNIFSDADSMLQFRKGLEEASKFLPQKPQLFTGFESAKTSLASQEAKGRVGVIKMEDSVRENSSSSYSSNLSSYGLLKSRKNHERQGSDDEEGRSNKQSAVRVEESEISEMFDRVLLSVENVPLCAEQKDGSVMESSTQVGELDGGKSRSKKQGRKRENVDLRTLLVLCAQAVSGNDNRTANELFKQIRQHSSPSGDASQRLAHYYANAIEARMVGAGTGTQILYMSQKMINAADYLKAYQVFISVCPYKKFAHFFANKMILKTAETAETLHIIDFGILYGFQWPILIKFLSERVGGPPKLRITGIEYPQAGFRPAERIEETGRRLANYCQRFNVSFEYKAVPSRNWETIQVQDLNIKSNEVVAVNCLIRFKNLHDETIEVNSPKDAVLKLIRKINPSIFVQSIVNGSYNAPFFATRFKESLFHYSAMYDMFDTLIPRKNEWRLTIERELLGREIMNVVACEGFERVERPESYKQWQVRNLRAGLRQLPLDKEIMVKFRGKLREWYHKDFVFDEDNNWMLQGWKGRILYASACWVPA* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6550 728 Pfam GRAS domain family 353 725 IPR005202 -
Psa5g6550 728 MobiDBLite consensus disorder prediction 269 296 - -
Psa5g6550 728 MobiDBLite consensus disorder prediction 267 296 - -
Psa5g6550 728 MobiDBLite consensus disorder prediction 128 147 - -
Psa5g6550 728 PANTHER SCARECROW-LIKE PROTEIN 34 27 727 - -
Psa5g6550 728 MobiDBLite consensus disorder prediction 319 348 - -
Psa5g6550 728 ProSiteProfiles GRAS family profile. 344 726 IPR005202 -
Psa5g6550 728 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 27 727 IPR005202 -
Psa5g6550 728 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6550 Psa-Chr5 551901889 551904946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6550 65 728 GRAS Transcription Factor Family AT1G07530 49.353 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g6550 GRAS 6.3e-114 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6550 - - cam:101504630 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6550 5 551901889 551904946 Psa5g6550 5 551901889 551904946 ECH
Psa5g6550 5 551901889 551904946 Psa7g4923 7 431039224 431042758 PCT