Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6549 ATGCTTTCTCAAAACTCCTTTCTGAAAGATTTCTGTGTTCCTAACACAGTAAACCCGGAAACAAATGGTTTGGAGTTGGAAGATTCATCACCCTCAACTTCTTCTGACACAACCTCAAATGGAGGAGGGTCCTCAGAATCGACAAGATACTCCAATCACATCCTCAGATACATAAGTGACATACTCATGGATGAAGAAAATGAATTGGAGCACAAACCCTGCATGTTGCAGGAATGTTTAAGACTCCAAGCTGCTGAAAAATCATTCTATGATGTTCTGGATCACAACCATCCTTCATCAAATGATAGGACTGAACAAGATGGAAACTTCGGCCGCACCGCTAGTTTTGAGAGCAATAGCGGTAGCTGCACCACTGATAACTCAAATGAATCTGATTGGGTCAACCTTGTTGGAGAAATTGACTCTTCTTCATTACAGCTACAAACCCCTCTAGTAGAACAAAACTACTATGATTTGATAGAACCAGATCCAGTTAACATTGAGTCACAAACTGCAAGCCGTTTTCACGATGGAACTTGGAGTTGGAATGATATTCAGCCAGTGATTGCGGTTGAAGAGGTTCCGGCTTCGTTTGTTACAAGAGAAAAGAGAAGTCATGTGATGGATGGTGATGATGATAATTGTATTAATGAACAAGAGGGAAGGGGTAGGAAGGTTTCAGCTAACTTCTCTGATGAATTAGAGGCACCAGAGATTTTAGATGAGGTACTACTTTATCAAACAGGACGGCATCAACACCAACAACCATCAAAGAATATTGATTCAGGAGGAAAGGCAACAGCAAGACGTTCGCGTTTGAAGAAAGGATCTACTGATAATGCGGCAGCTGTGGATTTGTGGACCATGCTAACACAATGTGCACAGGCAGTGGCGAGCTACGATCAAAGGAATACAAATGAGCTACTCAAGCAGATTAGGCAACACTCTTCGCCTTTTGGCGATGGACTCCAGCGTTTAGCTTATTACTTTGCTGATGGTCTTGAGATAAGATTGGCTGCCGAGACGCCATCGTATATGCCTATTGATATGCCAACCGCGGGAGATATGTTGAAAGCTTACAAACTCTTCTTTACCGCGTCTCCTTTGCAGAGAATGACGAATGTGTTGTTAACCGAAACAATTTTCAGTATAGTGGAGAGCGAGCCCAGCGTTCACATTATCGATTTTGGAATTTGCTATGGTTTCCAGTGGCCCTGCCTCATCAAAAAACTTTCAACAATGCCTGGTGGCCCTGCAAAGCTTCGAATTACTGGAATTGAGCTTCCTCAGCCAGGATTTAGACCTGCAGAGTGGGTGGAAGAAACCGGACGCCGTTTAGAAAACTACTGCAAGAAGTTCAATGTTCCGTTTGAATACAACTGCATTGCACAGAAATGGGAAACTATCCGACTCGAGGATCTAAAGATAGACAGGAATGAAATAACTTTTGTTAGCTGTTTGTACAGACTGAAAAATTTGCCTGACGAAACTGTGGCAGTGAATTGTCCAAGAGAAGCTGTGTTGAAGTTGGTCAGGAAGATTAATCCAAAAATATTCTTTCATGGAGTTGTAAACGGAAGTTATAGTGCACCGTTTTTCCTGACTCGGTTTAGAGAAGCACTATACCACTTCTCATCATTGTTTGATATGTTTGAGGCTAACGTGCCTCGCGAAGACACACAAAGGCTGGTGCTTGAGAAAGGGTTGTTTGGAAGGGATGCTATAAATGTAATAGCTTGTGAGGGTGCAGAGAGAGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAAATCAGGAACAGGAGAGCAGGGCTCAAGCAAATCAGGTTGGATTCTAAGTTAGTGAATGAAACCAAAGCAATGTTAAAGAGGGAATACCATAAAGATTTTGTAGTTGATGAGGATGGTAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTTTGAATGCTTTTTCTGCTTGGGTTCCTGCTTAA 1971 0.4262 MLSQNSFLKDFCVPNTVNPETNGLELEDSSPSTSSDTTSNGGGSSESTRYSNHILRYISDILMDEENELEHKPCMLQECLRLQAAEKSFYDVLDHNHPSSNDRTEQDGNFGRTASFESNSGSCTTDNSNESDWVNLVGEIDSSSLQLQTPLVEQNYYDLIEPDPVNIESQTASRFHDGTWSWNDIQPVIAVEEVPASFVTREKRSHVMDGDDDNCINEQEGRGRKVSANFSDELEAPEILDEVLLYQTGRHQHQQPSKNIDSGGKATARRSRLKKGSTDNAAAVDLWTMLTQCAQAVASYDQRNTNELLKQIRQHSSPFGDGLQRLAYYFADGLEIRLAAETPSYMPIDMPTAGDMLKAYKLFFTASPLQRMTNVLLTETIFSIVESEPSVHIIDFGICYGFQWPCLIKKLSTMPGGPAKLRITGIELPQPGFRPAEWVEETGRRLENYCKKFNVPFEYNCIAQKWETIRLEDLKIDRNEITFVSCLYRLKNLPDETVAVNCPREAVLKLVRKINPKIFFHGVVNGSYSAPFFLTRFREALYHFSSLFDMFEANVPREDTQRLVLEKGLFGRDAINVIACEGAERVERPETYKQWQIRNRRAGLKQIRLDSKLVNETKAMLKREYHKDFVVDEDGKWVLQGWKGRILNAFSAWVPA* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6549 656 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 8 655 - -
Psa5g6549 656 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 655 IPR005202 -
Psa5g6549 656 ProSiteProfiles GRAS family profile. 277 654 IPR005202 -
Psa5g6549 656 MobiDBLite consensus disorder prediction 250 275 - -
Psa5g6549 656 MobiDBLite consensus disorder prediction 250 264 - -
Psa5g6549 656 Pfam GRAS domain family 288 653 IPR005202 -
Psa5g6549 656 MobiDBLite consensus disorder prediction 23 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6549 Psa-Chr5 551890734 551894561 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6549 44 655 GRAS Transcription Factor Family AT2G29060 41.991 1.04e-160 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g6549 GRAS 3.1e-105 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6549 - - cam:101504630 1041.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6549 5 551890734 551894561 Psa5g6549 5 551890734 551894561 ECH
Psa5g6549 5 551890734 551894561 Psa7g4923 7 431039224 431042758 ECH
Psa5g6549 5 551890734 551894561 Psa7g4925 7 431046421 431048112 PCT
Psa7g4924 7 431042925 431046270 Psa5g6549 5 551890734 551894561 PCT