Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6548 ATGCTTTCTTCAAACACCTTTTTGCCAGATTTTTATGTTCCTGACACGGTAAACCAAGTAACAAATGGTTTTGAGTTGGAAGGTTCGACATCTTCACCTTCATCTTTCACAAGCTCAAATGAAGAATCCACAGAAGGGACAAGATATTCCAATAACTTTCTGAGATACATAAATGACATCCTCATGGACGAAGAAGATGAATTAGAGCGCCAACCCTGCATGTTGCAGGAATGTCTAAGACTCCAAGCTGCTGAAAAATCATTCTACGATGTTCTGGGCCAGAGCTATCCTAATTCATCATGTGATGATACCACTGACCCTGATGGAAGTTTCGGTCCCGCCGCTAGTTTTGACAGCAATAGCAGCAGCTGCACCACTGATAACTCGTATGAATATGATTGGGTCAATCTTGTTGGAGAAATCAACTCTTCTTCATTACCACTACAAACCCCTTTAGTAGAACAAAACTACTATGAGGTGACAGAACTTGATCCAGTAGTTATTGAGTCACAAGCTGCTAAGTATTTTCACAATGGAACTAGGAGTTGGAATGATATTCAACCAGTGATGGTTGCAGAGGTTTCAGCTTCATTGGTACCAAGACAAAAGAGAAGTCATATGACAGATAATAATGGTGATACTTGTAATGAAGAAGAGGGAAGAGGTAGCAAGGTTTCGGCTATCTTCTCTGATGAATTAGAGGCACCAGAGATTTTAGATGAGGTGCTGCTTTGTCAGATAGGAAGGACTCAAAACCAACAAGCATCACAGACTGTTGATTCAGGAGGAAAGGCTACGTCAACTACTTTGCGTTCAAAGAAAGTATCTAGAAATAACAATGCCGCAGCTGTGGATTTGTGGACCATGCTAACTCAATGTGCACAGGCTGTGGCGAGCTACGATCAGAAGAATACAAATGAGCTACTTAAGCAGATTAGGCAACATTCTTCGCCATTTGGGGATGGGCTCCAGCGCTTAGCGCATTACTTTGCTAATGGTCTTGAGATCAGATTGGCTGCTGGGACGCCATCATATAAGGCGCTTGATGTGGCAACTGCTGGAGATATGTTGAAAGCTTACAAACTATTTGTTACCTCGTCTCCTTTGCAGAGAATGACAAATTTGTTATTAACCAAAACGATTCTCAGTGTAGTGAAGAACGAGAGCAGCGTTCATATTATCGATTTTGGAATTTGCTATGGTTTCCAGTGGCCATGCCTTATCAAAACACTTTCATCACGACATGGAGGTCCTCCAAAGCTTCGCATTACGGGAATTGAACTTCCTCAGCCAGGATTTAGGCCTGCAGAGAGGGTGGAGGAAACCGGACGGCGGTTAGAAAACTTCTGCAAGAAGTTCAATGTCCCGTTTGAATATAACTGCATTGCACAGAAATGGGAAACTATACGGCTCGAGGATCTAAAGATAGACAGGAATGAAATAACTCTTGTTAGCTGTTTGTACAGACTGAAAAACCTTCCTGATGAAACTGTGGCAGTGAATTGTCCAAGAGAAGCTGTGTTGAAGTTGATCAAAAAGATTAATCCAAAAATCTTCTTCCATGGAGTTGTCAATGGAAGTTACAGCGCACCGTTTTTCCTGACTCGGTTTAAGGAAGCACTCTACCACTTCTCATCGTTGTTTGATATGTTTGAGGCTAACGTGCCTCGCGAAGACACGCAAAGGTTGACGCTTGAAAAGGGGTTGTTTGGAAGGGACGCTATAAATGTAATAGCTTGTGAGGGTGCAGCGAGAGTTGAAAGGCCTGAGACCTACAAGCAGTGGCAAATCAGGAACAGGAGAGCAGGGCTCAAGCAAATCAGGTTGGATTCTAAGTTAGTGAATGAAACCAAAGCAATGTTGAAGAGGGAATACCATAAAGATTTTGTAGTTGATGAGGATGGTAAGTGGGTTTTGCAGGGATGGAAAGGGCGTATTTTGAATGCTTTTTCTGCTTGGGTTCCTGCTTAA 1971 0.4257 MLSSNTFLPDFYVPDTVNQVTNGFELEGSTSSPSSFTSSNEESTEGTRYSNNFLRYINDILMDEEDELERQPCMLQECLRLQAAEKSFYDVLGQSYPNSSCDDTTDPDGSFGPAASFDSNSSSCTTDNSYEYDWVNLVGEINSSSLPLQTPLVEQNYYEVTELDPVVIESQAAKYFHNGTRSWNDIQPVMVAEVSASLVPRQKRSHMTDNNGDTCNEEEGRGSKVSAIFSDELEAPEILDEVLLCQIGRTQNQQASQTVDSGGKATSTTLRSKKVSRNNNAAAVDLWTMLTQCAQAVASYDQKNTNELLKQIRQHSSPFGDGLQRLAHYFANGLEIRLAAGTPSYKALDVATAGDMLKAYKLFVTSSPLQRMTNLLLTKTILSVVKNESSVHIIDFGICYGFQWPCLIKTLSSRHGGPPKLRITGIELPQPGFRPAERVEETGRRLENFCKKFNVPFEYNCIAQKWETIRLEDLKIDRNEITLVSCLYRLKNLPDETVAVNCPREAVLKLIKKINPKIFFHGVVNGSYSAPFFLTRFKEALYHFSSLFDMFEANVPREDTQRLTLEKGLFGRDAINVIACEGAARVERPETYKQWQIRNRRAGLKQIRLDSKLVNETKAMLKREYHKDFVVDEDGKWVLQGWKGRILNAFSAWVPA* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6548 656 MobiDBLite consensus disorder prediction 206 220 - -
Psa5g6548 656 ProSiteProfiles GRAS family profile. 277 654 IPR005202 -
Psa5g6548 656 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 8 655 - -
Psa5g6548 656 Pfam GRAS domain family 288 653 IPR005202 -
Psa5g6548 656 MobiDBLite consensus disorder prediction 26 46 - -
Psa5g6548 656 MobiDBLite consensus disorder prediction 201 221 - -
Psa5g6548 656 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 655 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6548 Psa-Chr5 551887459 551890276 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6548 49 655 GRAS Transcription Factor Family AT2G29060 44.304 1.49e-166 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa5g6548 GRAS 5.6e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6548 - - cam:101504630 1025.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6548 5 551887459 551890276 Psa5g6548 5 551887459 551890276 ECH
Psa5g6548 5 551887459 551890276 Psa7g4924 7 431042925 431046270 ECH
Psa5g6548 5 551887459 551890276 Psa7g4926 7 431072977 431075047 PCT
Psa7g4925 7 431046421 431048112 Psa5g6548 5 551887459 551890276 PCT