Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6541 ATGCTACTACTGATTAACCGTAATCACTATTCCACAGCACCGGGAATTTGGGAATTAGGGTTTCAGAATTGTGTTTCAGTTATGAATGGTTCTGGTTTAGGTGGTGGTTTTTTGAGTGGTTCCACCGGGGGTATTTTGGACATTAAATCTCCATTTCATAGACATCAATCAGTAACTGGTAAACACCATATGAATATCATGACTGGTTTGGAAAGTGATAACAAAATTGGTCTAGTTGATGTGAAAAATTTGAATGTTGTTGGGTTGAATTTCGGTAAAGGGAAAGCAATTGCTAGCTCGAACTCGAATCCGGTCAATGATAATGACATGAGCGAAGACGATGAGGCGGAAGATGGGAATTGCGAGAATTTGTTTGATGGTGGGAAAGGTAAGAAGGGGTCTCCCTGGCAGAGAATGAAGTGGACTGATGAAGTTGTTGGGCTTCTTATAGCGGTGGTGAGTTGTGTAGGTGACGATGGGACGATTGGTGGTGTTGATGGTGTTAAAAGGAAGTCTGTTGTTTTACAGAAGAAGGGTAAGTGGAAAACTGTTTCGAAGATAATGATAAGTAAGGGTTGTCATGTGTCGCCGCAACAGTGTGAGGATAAGTTTAATGATTTGAATAAGAGGTATAAGAGATTGAATGAGATACTTGGTAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCGTTGATGGATTCGATGACGAACTTGTCTGGTAAGGCGAAAGATGATGTTAGGAAGATTTTGAGTTCAAAACATTTGTTTTATAAGGAAATGTGTGCTTACCATAATGGACAAAGAGTACCGAGTAGCCATGATCTTGACTTGCATGGTTATTCGTTGGAACACGGGAAGGACTCGAGAGATAACGATGGGTCTGAGGATGAAGATGAGGATAACAATGAGAGTGAGGATGATGAGTTGGATGATGAAATTAATATTAATGCACATGGGGATGGTGGGAGGAGGATGGACGAGTTTTTTCATGATCGAGATAAATTAAGCGAGGAGGATGGTCACTCTTGGCCGGGATCTATTAGGATGAAGAAACTTGAGGTTGAAATGGCAAAGGTTTTTCAAGACCCTGCAAAGTCACCATGGGAGCGAAGAGAATGGATTAAGGTGCAGCTGTTGGAGCTTCAAGAGCAAAATGCCGAGTACCAAGCCAAGGCTCTTGAACTTCAGAAACAACGGTTTAAGTGGTTAAGATACTGCAGCAAGAAGGATAGGGAGATGGAGAAGATGAAGATGGAAAACAAGCGAATGAGATTGGAAAATGACCGGAGAATCTTGAAACTGAAGCAGAGAGAGCAGGAGGCAGATTTCAGTAGGTCCGAGATGTCGTTAGACCCGACAACCATCGGTATCAACACGCCGCAAGGGAGAGAACATGTCAACTTGGCTAGACAGCAGTAG 1422 0.4262 MLLLINRNHYSTAPGIWELGFQNCVSVMNGSGLGGGFLSGSTGGILDIKSPFHRHQSVTGKHHMNIMTGLESDNKIGLVDVKNLNVVGLNFGKGKAIASSNSNPVNDNDMSEDDEAEDGNCENLFDGGKGKKGSPWQRMKWTDEVVGLLIAVVSCVGDDGTIGGVDGVKRKSVVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTCCQVVENPALMDSMTNLSGKAKDDVRKILSSKHLFYKEMCAYHNGQRVPSSHDLDLHGYSLEHGKDSRDNDGSEDEDEDNNESEDDELDDEININAHGDGGRRMDEFFHDRDKLSEEDGHSWPGSIRMKKLEVEMAKVFQDPAKSPWERREWIKVQLLELQEQNAEYQAKALELQKQRFKWLRYCSKKDREMEKMKMENKRMRLENDRRILKLKQREQEADFSRSEMSLDPTTIGINTPQGREHVNLARQQ* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6541 473 Coils Coil 372 399 - -
Psa5g6541 473 Coils Coil 407 443 - -
Psa5g6541 473 Gene3D - 141 213 - -
Psa5g6541 473 MobiDBLite consensus disorder prediction 293 314 - -
Psa5g6541 473 Pfam Myb/SANT-like DNA-binding domain 138 263 IPR044822 -
Psa5g6541 473 MobiDBLite consensus disorder prediction 447 473 - -
Psa5g6541 473 PANTHER F16F4.11 PROTEIN-RELATED 28 447 - -
Psa5g6541 473 MobiDBLite consensus disorder prediction 438 473 - -
Psa5g6541 473 MobiDBLite consensus disorder prediction 285 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6541 Psa-Chr5 551718872 551721106 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g6541 Myb_DNA-bind_4 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6541 - - ccaj:109806698 615.15