Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6537 ATGGGAGTTTGTTTAAGCGCTCAAATCAAAGCTGAAACTCCTTATAACACTGGGTTAAATTCAAAGAACTCAGCTTCAACTGGAAATGATCTGAGTAGCTTAAATAGCAAGGTTTCAGCTGCATCAGTGCCTCAGACTCCTCGAAGCGAAGGTGAAATCTTGCAGTCATCCAAATTAAAGAGCTATACCTTAGCAGAACTTAAGTCAGCCACTAGAAATTTTCGTCCGGATAGTGTTTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAGGGTTGGATTGATGAGAATTCGTTGGCTGCTGCTAAACCTGGTACTGGAATTGTTATTGCTGTTAAAAGACTTAATCTAGAAAGCTTCCAAGGTCACAGAGAGTGGTTGGCCGAAGTCAACTATCTTGGACAATTTTCTCATCCTCATCTGGTGAAATTGATTGGCTATTGCCTTGAAGATGAACACCGCCTTCTTGCCTATGAGTTTATGCCCCGTGGAAGCTTGGAGAATCACTTGTTCAGGAGAGGATCGTATTTTCAACCTCTTTCATGGAGCTTGCGTGTGAAGGTTGCTCTTGACGCTGCCAAAGGGCTTGCGTTTCTGCACAGTGCTGAAAATAAAGTGATATATAGAGATTTTAAGACTTCGAATGTCTTGTTGGATTCTGATTATAATGCAAAGCTTTCTGATTTCGGGTTGGCAAAGGATGGTCCAACCGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCTGCCCCTGAATATCTAGCCACAGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTCGGAGTTGTCCTGCTTGAAATGTTATCCGGTAAGAGGGCAGTTGACAAGAATAGACCGTCTGGACAACACAACTTGGTGGAATGGGCTAAACCGTATCTGGCGAACAAACGTAAGATTTTCAGCGTGATAGATAGTCGGCTCGAAGGGCAGTATTCAGCAGACGAGTCCTTCAAGGTAGCCACCCTTGCTTTGCGATGCCTATCGACAGAATCCAAGTACAGGCCCAACATGGATGAAGTTGTTAATATTTTGGAGCAGCTGAAGGTACCTAATGTGAATGTAGGAAATCAAAAGCGATATCGGAGAAAAAGTGCTGATGACGTTAGCCATGCAAAGGACAACACATCTGGTGCTAATTCGAAGAGTCACAATGCTTATCCGCGTATCACATTGTCTCCTCTCTATACCTGA 1227 0.4336 MGVCLSAQIKAETPYNTGLNSKNSASTGNDLSSLNSKVSAASVPQTPRSEGEILQSSKLKSYTLAELKSATRNFRPDSVLGEGGFGSVFKGWIDENSLAAAKPGTGIVIAVKRLNLESFQGHREWLAEVNYLGQFSHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRVKVALDAAKGLAFLHSAENKVIYRDFKTSNVLLDSDYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTTKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFSVIDSRLEGQYSADESFKVATLALRCLSTESKYRPNMDEVVNILEQLKVPNVNVGNQKRYRRKSADDVSHAKDNTSGANSKSHNAYPRITLSPLYT* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6537 408 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Psa5g6537 408 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Psa5g6537 408 Gene3D Transferase(Phosphotransferase) domain 1 160 383 - -
Psa5g6537 408 CDD STKc_IRAK 80 359 - -
Psa5g6537 408 SUPERFAMILY Protein kinase-like (PK-like) 50 356 IPR011009 -
Psa5g6537 408 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Psa5g6537 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Psa5g6537 408 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6537 408 PANTHER KINASE 1B 24 387 - -
Psa5g6537 408 PANTHER OS01G0588500 PROTEIN-RELATED 24 387 - -
Psa5g6537 408 MobiDBLite consensus disorder prediction 366 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6537 Psa-Chr5 551254063 551257953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6537 52 356 Glycoside Hydrolase AT3G07070 48.366 6.76e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Psa5g6537 PK_Tyr_Ser-Thr 2.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6537 - - gmx:100798404 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6537 5 551254063 551257953 Psa5g6537 5 551254063 551257953 ECH