Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6530 ATGAAGCTTTTGATCCCTTCACACACTTCTCCCTTTTCTTCTCTACCTCAGAACCAACCCATGGAACATCAACAATCTTCACCTACAAACCCTAATAAAGTTCATCTTGCTCTTGGTAAATCGCTTCACAAAACCACTACCTTGCTTCAATGGACTTTTAATCACTTTCGGAATGCTGAAATTGTTATTCTTCATGTTTATCAACCTTCTCCTGTTATACCTACTTTATTGGGGAAAATGCCAGCTTCCCAAGCTAATCCTGAAGTGGTATCTGCTTTTAGAAGAGAGGAAAGAGAACAGACCATGAGATTAACTGATAAGTATTTGAGAATTTGCTTTGCATCTAAGGTGAAGGCGAGCGTTATTGTAACGGAAGCCAGCCAAGTCCAGAAAGGAATTGTTGATTTGGTTGTTAAACATAATATTACAAAGCTTGTAATTGGAGCGGAATCGGAAAATTGCATGAAAGTGAAAAGGAATTCCGGGAAAGCAAATTACACTTCCAAACATGCTCCCCTGTTTTGTGAAATATGGTTTATCTATAAAGGCAGACACATTTGGACAAGAGAGGCTTCTGAAAAACCATGTTCTTTGTCTTCAGGCACTCAACCTGAAATTGCAGCAACAGAAAGCTTGAGATTTAGATCTTCTCAAAATGGTAAGAACGAATTACCCCATTCGGAATATCTTCAACCAAATTCTGCTAGAACTACAGTATGTTCTGGAATTAGAAGCTTGAATCTGGGTGAAATCATAGAAACTGAAGCCACTAATTCATCCAAATCGTCCCGTGGTAGCAGTTATTGTTCTCCGCAAAATTCTGTTGGGGTTTATCAAGATGCATATTTAGAGGACATGGAAGAAAGAATTAACAGTCAACTTATTGAAACCGAAAGAGAAGCTGAGGCAGCAACAGATGAGTCCTTTGCAGAACTATTAAACTGCAGGAGGTTGGAAATCGAAGCCATGGAAGCCATACAGAAGGTCAAATTGTTTGAATCTGCCCATGCCCATGAGGTGGAGCTCAGGAAAGAGGCTGAGGATGCACTTAGAGTTACCGTAACAGAACAACAAAAGCTCTTAGAAGAGAGTGAAAATATTTCCGGAGAGCTACAAATGACCATGAGAAATGTGGCCCTACTAGATAGCCGTGCTAAGGAAGCAACCCGTAGGCGAGATGAAGCTGCACACGAGCTCTTGCTAATTCAAACATCAATATCAACCTTGTGGCAAGAAAGACAGCAGATTAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTGGAACGGTGGAAAAGTCGTGGGCAAATCGGAGCAGCACATTACAACGGGGTCATTGGATTTGCCGTAGAACTGCCTGAGTTAGCAGAATTTTCATTATCAGATATTGAAAATGCTACATGTAATTTTTCCAAGAGCTTTAAAATTGCGCAAGGTGGATTTGGTATTATATATAAGGGGGAAATGTTGGGTAGAACTGTTGCTATAAAGAAGTTCCATCAACATAATGTGCAAGGACCAGCAGAGTTTCATCGAGAGGTTCAAATTCTTAGTAGTCTCCAACATCCTCATCTATTGACCTTGCTTGGTGTTTGCCCCGATGCATGGTCAATTGTATATGAGTATCTCCCGAATGGAACTCTTCAAGACTACCTATTCCGTAAAAGTAACATTATCCCTTTGACGTGGAATATTAGAGCACGAATGATTGCCGAAATATCCAGTGCACTCTGCTTCTTACATTCATTTAAACCGGAAGCTATTATCCACGGTGATCTTAAGCCCGAGACTATACTTCTTGATTCTTCACTTAGTTGCAAGATATGTGAATTCAGGTTTAGCAGGCTTGTGACAGAAGAGTCTCACTATAGTGCTAGTTTCCACTTGAGCACAGAGCCAAAAGGTGCTTTCACATATACGGATCCTGAGTTTCAAAGAACTGGGGTACTGACACCCAAGTCTGACACCTACTCCTTCGGGCTTATTATTTTGCAACTCCTTACTGGCAGGACTCCAGTTGGATTAGCAGTTCTAGTTCGCCATGCAGTTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCATCCGGAGAATGGCCTTTATCTGTAGCATCACGGTTGGCAGAACTGGGTTTGCAATGTTGCGCTCAAAATCGCAGAAACAGGCCAGAGTTAACACCTGCTCTTGTAAGAGAATTGGAACAGTTACATGTTTCAGAAGAGAGACCCGTGCCATCGTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAATTGCAGCAGATGGATTTACATATGAAGGGGATGCCATACGCGAATGGTTGGAAAATGGACATGATACTTCTCCAATGACTAATTTAAAATTGATTCATTTGCTTCTCACTCCCAATCACTCAATTAGACTTGCCATCCAAGATTGGCTCTGCAAATCATAA 2442 0.4111 MKLLIPSHTSPFSSLPQNQPMEHQQSSPTNPNKVHLALGKSLHKTTTLLQWTFNHFRNAEIVILHVYQPSPVIPTLLGKMPASQANPEVVSAFRREEREQTMRLTDKYLRICFASKVKASVIVTEASQVQKGIVDLVVKHNITKLVIGAESENCMKVKRNSGKANYTSKHAPLFCEIWFIYKGRHIWTREASEKPCSLSSGTQPEIAATESLRFRSSQNGKNELPHSEYLQPNSARTTVCSGIRSLNLGEIIETEATNSSKSSRGSSYCSPQNSVGVYQDAYLEDMEERINSQLIETEREAEAATDESFAELLNCRRLEIEAMEAIQKVKLFESAHAHEVELRKEAEDALRVTVTEQQKLLEESENISGELQMTMRNVALLDSRAKEATRRRDEAAHELLLIQTSISTLWQERQQIRRQKMEALRWLERWKSRGQIGAAHYNGVIGFAVELPELAEFSLSDIENATCNFSKSFKIAQGGFGIIYKGEMLGRTVAIKKFHQHNVQGPAEFHREVQILSSLQHPHLLTLLGVCPDAWSIVYEYLPNGTLQDYLFRKSNIIPLTWNIRARMIAEISSALCFLHSFKPEAIIHGDLKPETILLDSSLSCKICEFRFSRLVTEESHYSASFHLSTEPKGAFTYTDPEFQRTGVLTPKSDTYSFGLIILQLLTGRTPVGLAVLVRHAVSCGKLSSILDSSSGEWPLSVASRLAELGLQCCAQNRRNRPELTPALVRELEQLHVSEERPVPSFFLCPILQEIMHDPQIAADGFTYEGDAIREWLENGHDTSPMTNLKLIHLLLTPNHSIRLAIQDWLCKS* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6530 813 Coils Coil 287 307 - -
Psa5g6530 813 Gene3D Transferase(Phosphotransferase) domain 1 542 742 - -
Psa5g6530 813 Pfam U-box domain 743 812 IPR003613 GO:0004842|GO:0016567
Psa5g6530 813 MobiDBLite consensus disorder prediction 7 31 - -
Psa5g6530 813 PANTHER OS02G0152300 PROTEIN 22 812 - -
Psa5g6530 813 Gene3D HUPs 28 171 IPR014729 -
Psa5g6530 813 ProSiteProfiles U-box domain profile. 742 813 IPR003613 GO:0004842|GO:0016567
Psa5g6530 813 CDD STK_N 33 183 - -
Psa5g6530 813 ProSiteProfiles Protein kinase domain profile. 469 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6530 813 PANTHER OS10G0100500 PROTEIN 22 812 - -
Psa5g6530 813 ProSitePatterns Zinc finger C2H2 type domain signature. 605 627 IPR013087 -
Psa5g6530 813 SMART Ubox_2 746 809 IPR003613 GO:0004842|GO:0016567
Psa5g6530 813 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 49 151 - -
Psa5g6530 813 Coils Coil 378 398 - -
Psa5g6530 813 CDD RING-Ubox_WDSUB1_like 747 788 - -
Psa5g6530 813 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 743 813 IPR013083 -
Psa5g6530 813 MobiDBLite consensus disorder prediction 1 31 - -
Psa5g6530 813 Gene3D Phosphorylase Kinase; domain 1 445 541 - -
Psa5g6530 813 SUPERFAMILY RING/U-box 740 812 - -
Psa5g6530 813 Pfam Protein tyrosine and serine/threonine kinase 474 725 IPR001245 GO:0004672|GO:0006468
Psa5g6530 813 SUPERFAMILY Protein kinase-like (PK-like) 453 735 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6530 Psa-Chr5 551160290 551166273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6530 33 810 U-box Gene Family AT2G45910 36.149 1.99e-167 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Psa5g6530 PK_Tyr_Ser-Thr 2.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6530 - - gmx:100788846 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6530 5 551160290 551166273 Psa5g6530 5 551160290 551166273 ECH