LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa5g6529	ATGGCCGAAGAGGATATTCAACCACTCGTCTGTGATAATGGTACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTTGGCCGACCACGCCACACCGGCGTGATGGTTGGAATGGGACAAAAAGATGCATATGTTGGAGATGAAGCTCAGTCCAAACGTGGTATATTGACTCTAAAATATCCAATTGAGCATGGTATTGTGAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTTCGCGTAGCCCCCGAAGAGCACCCGGTTTTGCTCACCGAAGCGCCTCTTAACCCGAAGGCTAATCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACACCTGCAATGTATGTTGCCATCCAGGCCGTTCTATCGCTCTATGCCAGTGGTCGAACAACCGGTATTGTTCTTGACTCTGGAGATGGTGTGAGCCACACGGTACCTATTTACGAAGGCTATGCCCTTCCACACGCTATCCTTCGTCTCGATTTAGCAGGGCGTGACCTCACCGACGCCCTGATGAAAATCCTAACCGAGCGTGGCTATTCGTTCACTACGACAGCCGAGCGTGAAATCGTAAGGGATGTGAAGGAAAAACTGGCTTACATTGCGCTTGATTACGAGCAAGAGCTTGAAACTTCAAGAACAAGTTCTTCTGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGATCATCACCATTGGTGCTGAGCGTTTCCGTTGTCCTGAGGTTCTCTTCCAGCCGTCCATGATTGGAATGGAAGCCGTTGGCATTCACGAAACGACCTACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGGACTTGTATGGAAACATAGTACTCAGTGGTGGTTCTACCATGTTTACTGGTATTGCAGACAGAATGAGCAAGGAAATTAGCGCGTTGGCTCCAAGCAGTATGAAGATCAAGGTGGTTGCTCCGCCCGAGCGAAAATACAGTGTCTGGATTGGTGGATCTATCTTAGCTTCTCTCAGCACTTTTCAACAGATGTGGATTGCGAAGGCTGAGTACGATGAATCCGGTCCTTCGATCGTACACAGGAAATGCTTTTAG	1131	0.4721	MAEEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSRTSSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*	377

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Psa5g6529	376	Gene3D	-	9	370	-	-
Psa5g6529	376	ProSitePatterns	Actins signature 2.	357	365	IPR004001	-
Psa5g6529	376	PANTHER	ACTIN-97	3	375	-	-
Psa5g6529	376	PANTHER	ACTIN	3	375	IPR004000	-
Psa5g6529	376	SUPERFAMILY	Actin-like ATPase domain	5	154	IPR043129	-
Psa5g6529	376	ProSitePatterns	Actins and actin-related proteins signature.	105	117	IPR020902	-
Psa5g6529	376	CDD	NBD_sugar-kinase_HSP70_actin	9	182	-	-
Psa5g6529	376	SUPERFAMILY	Actin-like ATPase domain	148	376	IPR043129	-
Psa5g6529	376	ProSitePatterns	Actins signature 1.	54	64	IPR004001	-
Psa5g6529	376	PRINTS	Actin signature	27	36	IPR004000	-

Showing 1 to 10 of 19 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Psa5g6529	Psa-Chr5	551143713	551145686	Dispersed

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Psa5g6529	4	376	Cytoskeleton Gene Families	AT3G12110	96.515	0.0	756

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa5g6529	K10355		-	vvi:100246726	743.421

Showing 1 to 1 of 1 entries

Previous1Next

Event-related genes

Show entries

Search:

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa5g6529	5	551143713	551145686	Psa5g6529	5	551143713	551145686	ECH

Showing 1 to 1 of 1 entries

Previous1Next