Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6529 ATGGCCGAAGAGGATATTCAACCACTCGTCTGTGATAATGGTACAGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTTCCTAGCATTGTTGGCCGACCACGCCACACCGGCGTGATGGTTGGAATGGGACAAAAAGATGCATATGTTGGAGATGAAGCTCAGTCCAAACGTGGTATATTGACTCTAAAATATCCAATTGAGCATGGTATTGTGAGCAATTGGGATGATATGGAGAAGATTTGGCATCACACCTTCTACAATGAGCTTCGCGTAGCCCCCGAAGAGCACCCGGTTTTGCTCACCGAAGCGCCTCTTAACCCGAAGGCTAATCGTGAGAAAATGACACAAATTATGTTTGAGACATTCAACACACCTGCAATGTATGTTGCCATCCAGGCCGTTCTATCGCTCTATGCCAGTGGTCGAACAACCGGTATTGTTCTTGACTCTGGAGATGGTGTGAGCCACACGGTACCTATTTACGAAGGCTATGCCCTTCCACACGCTATCCTTCGTCTCGATTTAGCAGGGCGTGACCTCACCGACGCCCTGATGAAAATCCTAACCGAGCGTGGCTATTCGTTCACTACGACAGCCGAGCGTGAAATCGTAAGGGATGTGAAGGAAAAACTGGCTTACATTGCGCTTGATTACGAGCAAGAGCTTGAAACTTCAAGAACAAGTTCTTCTGTTGAGAAAAGCTATGAGCTTCCTGATGGACAGATCATCACCATTGGTGCTGAGCGTTTCCGTTGTCCTGAGGTTCTCTTCCAGCCGTCCATGATTGGAATGGAAGCCGTTGGCATTCACGAAACGACCTACAACTCAATCATGAAGTGTGATGTTGATATCAGAAAGGACTTGTATGGAAACATAGTACTCAGTGGTGGTTCTACCATGTTTACTGGTATTGCAGACAGAATGAGCAAGGAAATTAGCGCGTTGGCTCCAAGCAGTATGAAGATCAAGGTGGTTGCTCCGCCCGAGCGAAAATACAGTGTCTGGATTGGTGGATCTATCTTAGCTTCTCTCAGCACTTTTCAACAGATGTGGATTGCGAAGGCTGAGTACGATGAATCCGGTCCTTCGATCGTACACAGGAAATGCTTTTAG 1131 0.4721 MAEEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSRTSSSVEKSYELPDGQIITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6529 376 Gene3D - 9 370 - -
Psa5g6529 376 ProSitePatterns Actins signature 2. 357 365 IPR004001 -
Psa5g6529 376 PANTHER ACTIN-97 3 375 - -
Psa5g6529 376 PANTHER ACTIN 3 375 IPR004000 -
Psa5g6529 376 SUPERFAMILY Actin-like ATPase domain 5 154 IPR043129 -
Psa5g6529 376 ProSitePatterns Actins and actin-related proteins signature. 105 117 IPR020902 -
Psa5g6529 376 CDD NBD_sugar-kinase_HSP70_actin 9 182 - -
Psa5g6529 376 SUPERFAMILY Actin-like ATPase domain 148 376 IPR043129 -
Psa5g6529 376 ProSitePatterns Actins signature 1. 54 64 IPR004001 -
Psa5g6529 376 PRINTS Actin signature 27 36 IPR004000 -
Psa5g6529 376 PRINTS Actin signature 50 61 IPR004000 -
Psa5g6529 376 PRINTS Actin signature 62 84 IPR004000 -
Psa5g6529 376 PRINTS Actin signature 116 129 IPR004000 -
Psa5g6529 376 PRINTS Actin signature 141 160 IPR004000 -
Psa5g6529 376 PRINTS Actin signature 237 253 IPR004000 -
Psa5g6529 376 Gene3D Actin; Chain A, domain 4 181 272 - -
Psa5g6529 376 Pfam Actin 4 376 IPR004000 -
Psa5g6529 376 SMART actin_3 6 376 IPR004000 -
Psa5g6529 376 Gene3D - 139 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6529 Psa-Chr5 551143713 551145686 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6529 4 376 Cytoskeleton Gene Families AT3G12110 96.515 0.0 756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6529 K10355 - vvi:100246726 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6529 5 551143713 551145686 Psa5g6529 5 551143713 551145686 ECH