Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6524 ATGATTCAACCTCAAACCTATTTAAATGTAGCCGATAATAGTGGAGCGCGTGAATTGATGTGTATTCGAATCATAGGAGATAGTAATCGAAGGTATGCTTATATTGGTGACATTATTGTTGCTGTAGTAAAAAAAACAGTGCCAAATTCATCTTTAGAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCAGCGGTTCTCATTGAACCTCAAACCTATTTAAATGTAGCCGATAATAGTGGAGCGCGCGAATTGATGTGTATTCGAATCATAGGAGCTAGTAATCGACGGTATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAAAAAGTAGTGCCAAATTCATCTTTAGAAAGATCTCAAGTCATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTAAAACGTCGTAATGGTATAATAATAAAGTATGATGATAATGCAGCGGTTCTCATTGATAAAAAAGGAAATCCAAAAGGAACTCGATTTTTTTCCGCAATATCCCGAGAATTGAGACAGTTAAATTTCACGAAAATAGTTTCATTAGCACCCGAGGTATTATAA 624 0.3446 MIQPQTYLNVADNSGARELMCIRIIGDSNRRYAYIGDIIVAVVKKTVPNSSLERSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIEPQTYLNVADNSGARELMCIRIIGASNRRYAYIGDIVVAVIKKVVPNSSLERSQVIRAVIVRTCKELKRRNGIIIKYDDNAAVLIDKKGNPKGTRFFSAISRELRQLNFTKIVSLAPEVL* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6524 207 Pfam Ribosomal protein L14p/L23e 87 207 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 Pfam Ribosomal protein L14p/L23e 1 90 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 SMART Ribosomal_L14_2 89 207 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 SMART Ribosomal_L14_2 1 88 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 Gene3D Ribosomal protein L14 1 88 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 86 205 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 88 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 Gene3D Ribosomal protein L14 89 207 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 SUPERFAMILY Ribosomal protein L14 87 207 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 1 88 - -
Psa5g6524 207 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 86 205 - -
Psa5g6524 207 TIGRFAM rplN_bact: ribosomal protein uL14 1 90 IPR005745 GO:0003735|GO:0006412|GO:0015934
Psa5g6524 207 TIGRFAM rplN_bact: ribosomal protein uL14 87 207 IPR005745 GO:0003735|GO:0006412|GO:0015934
Psa5g6524 207 SUPERFAMILY Ribosomal protein L14 1 90 IPR036853 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 Hamap 50S ribosomal protein L14 [rplN]. 86 207 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 Hamap 50S ribosomal protein L14 [rplN]. 1 93 IPR000218 GO:0003735|GO:0005840|GO:0006412
Psa5g6524 207 ProSitePatterns Ribosomal protein L14 signature. 145 171 IPR019972 -
Psa5g6524 207 ProSitePatterns Ribosomal protein L14 signature. 60 86 IPR019972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6524 Psa-Chr5 550853342 550854108 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6524 8 93 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.667 2.19e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6524 K02874 - gmx:3989333 211.46