Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6509 ATGGGTCAAAACCTTAGTTGCAGAGGAACCAACCATGATCATGGTCTCTTCACTGCCGTGCAACAAGGTAATCTTCAAGCTGTAACATCTCTGTTGCAACAAGACCCGTCACTTTTTCATCAAACAACTCTCTATGATCGGTTTTCGCCTCTTCATATTGCTGCTACCAATGGCCAGATCGAGATTCTGTCGAGGCTTTTACATGGATCTGTTAACCCAGATGTTTTAAATCGGCAAAAACAG 243 0.4321 MGQNLSCRGTNHDHGLFTAVQQGNLQAVTSLLQQDPSLFHQTTLYDRFSPLHIAATNGQIEILSRLLHGSVNPDVLNRQKQ 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6509 81 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 81 - -
Psa5g6509 81 Pfam Ankyrin repeats (3 copies) 14 72 IPR002110 GO:0005515
Psa5g6509 81 PANTHER HOMEOBOX PROTEIN WARIAI 1 81 - -
Psa5g6509 81 SUPERFAMILY Ankyrin repeat 2 79 IPR036770 -
Psa5g6509 81 Gene3D - 1 81 IPR036770 -
Psa5g6509 81 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Psa5g6509 81 SMART ANK_2a 11 40 IPR002110 GO:0005515
Psa5g6509 81 SMART ANK_2a 46 75 IPR002110 GO:0005515
Psa5g6509 81 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6509 Psa-Chr5 549464121 549464462 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6509 21 80 MAP Kinase Kinase Kinase AT1G14000 35.000 1.22e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6509 - - lang:109332719 132.494