Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6508 ATGCTTTTATGTTTTGTTATTAGTTTTTTTGAATTTTTTTTTGATGGAGCTCTTGTTTGTGCTTCAACTGGTAGATATGGCTATCCGGGGAGTACTCCACTTCATCTAGCTGCTAGAGGGGGATCTCTTGACTGCATTCGCGAATTGTTAGCATGGGGCGCGGATCGTCTTCAACGCGATTCATCTGGGCAGATACCATATATGGTTGCTATGAAACACAGACACGGATCATGCGCGTCGTTGCTAAATCCTACGTCTGCGGAGCCTCTTGTTTGGCCATCTCCACTGAAGTTCATCAGTGAACTTAATGCAGACGCCAAAGCCTTGTTAGAACAAGCCTTGATGGACGCGAACAAAGAAAGGGAGAAAAACATATTGAAAGGTGGCGGTTACTCTCTTCCGTCTCCATCACATTCTGCGTGTCTAGATGACAATATATCCGAGGTTAGTGAGTCAGAGTTATGTTGCATATGCTTTGAGCAGGTATGCACAATTGAAGTTCAAAACTGTGGTCACCAAATGTGTGCACAATGCACATTAGCCCTATGTTGCTACAACAAACCAAACCCGACAACCGCGTCCATTACTCCGCCCGTTTGTCCATTTTGTCGTAGCAACATTTCTCGACTCATGGTTATCACCAAAATAGAAACTCACGACGAAACCGATCAAGACAACATTGATACCAATTCTTCAAAGACAAACAAGTCGAGGAAACTCCGAAACTTGAACGACAGCGGTAGTAGCAGCTTCAAAGGACTATCTAGCGTAAGCTTCGGAAAATTAGGCGGCCGGAGCTCGGGAAGGGTAGCAGATGATTCCATTATGGTTAAGGAGGGTAATTAA 846 0.4444 MLLCFVISFFEFFFDGALVCASTGRYGYPGSTPLHLAARGGSLDCIRELLAWGADRLQRDSSGQIPYMVAMKHRHGSCASLLNPTSAEPLVWPSPLKFISELNADAKALLEQALMDANKEREKNILKGGGYSLPSPSHSACLDDNISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCYNKPNPTTASITPPVCPFCRSNISRLMVITKIETHDETDQDNIDTNSSKTNKSRKLRNLNDSGSSSFKGLSSVSFGKLGGRSSGRVADDSIMVKEGN* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6508 281 PANTHER HOMEOBOX PROTEIN WARIAI 15 274 - -
Psa5g6508 281 SUPERFAMILY RING/U-box 150 211 - -
Psa5g6508 281 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 15 274 - -
Psa5g6508 281 ProSiteProfiles Ankyrin repeat profile. 29 61 IPR002110 GO:0005515
Psa5g6508 281 Pfam Ankyrin repeats (many copies) 30 69 IPR002110 GO:0005515
Psa5g6508 281 Gene3D - 15 87 IPR036770 -
Psa5g6508 281 ProSiteProfiles Ankyrin repeat region circular profile. 29 55 - -
Psa5g6508 281 ProSiteProfiles Zinc finger RING-type profile. 155 204 IPR001841 -
Psa5g6508 281 Coils Coil 103 123 - -
Psa5g6508 281 MobiDBLite consensus disorder prediction 222 240 - -
Psa5g6508 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 223 IPR013083 -
Psa5g6508 281 MobiDBLite consensus disorder prediction 222 252 - -
Psa5g6508 281 SUPERFAMILY Ankyrin repeat 26 86 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6508 Psa-Chr5 549461623 549463696 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6508 30 161 Ion Channels AT2G25600 30.597 2.14e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6508 - - gmx:100786708 438.728