Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6504 ATGTCTCAACGAATCGGAACAAGGCTATTTGTCAGCAGACTATCATTTTACACTACAAACGAACAGTTCGTGAACTTGTTCTCACCATTCGGAGCACTTAAAGAAGCTTCACTTGTGATAGACCCAAAAACCAAAAGACCTAAAGGTTTTGGTTTTGTCTCGTATGAGTCTGGAATTGAAGCAGAAAAGGCTATGAAAGCGTTAAATGGAAGGATAGTTGATGGAAGGCTAATTTTTGTCGAACCTGCAAAAGTGAAGGATTCTTGA 267 0.3933 MSQRIGTRLFVSRLSFYTTNEQFVNLFSPFGALKEASLVIDPKTKRPKGFGFVSYESGIEAEKAMKALNGRIVDGRLIFVEPAKVKDS* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6504 88 Gene3D - 2 88 IPR012677 -
Psa5g6504 88 SMART rrm1_1 8 81 IPR000504 GO:0003723
Psa5g6504 88 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Psa5g6504 88 SUPERFAMILY RNA-binding domain, RBD 6 86 IPR035979 GO:0003676
Psa5g6504 88 PANTHER BNAA02G06700D PROTEIN 4 86 - -
Psa5g6504 88 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Psa5g6504 88 PANTHER TRANSFORMER-2-RELATED 4 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6504 Psa-Chr5 549023561 549025657 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6504 11 81 Eukaryotic Initiation Factors Gene Family AT5G06000 40.845 1.07e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6504 K13195 - gmx:100781760 126.716