Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6488 ATGGCACCACCTAAAGGTGATGTTTCAAAGAAGAATGATCCAAAGGCGCAGGCCTTGAAAGCTGCTAAAGCAGTGAAGTCAGGCACTGCCATTAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACTTTCCATAGGCCTAAGACTTTGTCTAAGGATAGGAACCCTAAGTACCCTCGCATTAGTGCTACTCCAAGGAATAAGCTTGATCATTATCAGATTCTGAAGTTTCCCCTCACAACCGAGTCTGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGTGCCGACAAAAAGAAAATCAAGGATGCCGTGAAGAAAATGTATGACATCCAGGCTAAGAAAGTTAACACCTTGATCAGGCCCGATGGCACCAAGAAGGCCTATGTTAGGTTGACACCTGATTATGATGCTTTGGATGTAGCAAACAAGATTGGGATTATTTAA 465 0.4237 MAPPKGDVSKKNDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSKDRNPKYPRISATPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6488 154 Hamap 50S ribosomal protein L23 [rplW]. 74 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa5g6488 154 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 154 IPR013025 GO:0003735|GO:0005840|GO:0006412
Psa5g6488 154 Gene3D - 35 154 IPR012677 -
Psa5g6488 154 ProSitePatterns Ribosomal protein L23 signature. 132 147 IPR001014 -
Psa5g6488 154 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 71 147 IPR012678 GO:0003735|GO:0005840|GO:0006412
Psa5g6488 154 TIGRFAM uL23_arch: ribosomal protein uL23 78 154 IPR019985 GO:0003735|GO:0005840|GO:0006412
Psa5g6488 154 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 154 - -
Psa5g6488 154 Pfam Ribosomal protein L23, N-terminal domain 15 63 IPR005633 -
Psa5g6488 154 Pfam Ribosomal protein L23 74 136 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6488 Psa-Chr5 548420513 548422899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6488 1 154 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 87.662 2.44e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6488 K02893 - pvy:116105236 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6488 5 548420513 548422899 Psa5g6488 5 548420513 548422899 ECH
Psa5g6488 5 548420513 548422899 Psa7g5020 7 441625537 441627052 ECH