Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6475 ATGTATGCACACTTTAATTCCAACAATATCCCATTATTGTCAACACCTTTTGTTCAACAAAACTCCATCCATGATTTCACTGAGTTTGACTCGTTCCAAGACACGCTCTCCCAACTCAACAACTCGGAATTGAGTAGTGGCTATAGCAGCTATGGTGGATCGCCTTCACCAACTCCAAGTACTCCCATTTTCATGCAGAGAAGCATTAGCAGCCATTCTCTTTATCATAACAATGGGACCCGCCATCATCCCCTCTCCGCTTTTTTCGCTGAATTGCTCGGCTCTGAAGACACTCCCGTGCGAAAAGTTTCCAGCACGGGAGATCTCCAGAGGGTTAAGAGAATGCAACATAATCATCATCATCATGTGGATAGTCCATTGTCTAGTGAAAGTAGCATGATCATAGAAGGTATGAACAGAGTTTGTCCATATAGCCCGGAAGAGAAGAAACTCAGAATTGAAAGATACAAAAGAAAGAGGAATCAAAGAAACTTCAACAAGAAAATTAAGTATGTTTGTAGGAAGACATTAGCGGACAGGAGGCCTCGAATCAGAGGACGGTTTGCGAGGAACGGTGAAATCGATACGAACAATACTTCAGTTCAGTGGAGTCACATTGGTGGTGGAGAGGAAGAAGATGAAGAAGATGAGAATTGGATTAATGTCTTTGATTCCATAGTTGCTGCAAATCTTGTTCATGATGAGTTTCAAGGAAGTTCATCTTTTGGTCTATTGTATTAG 741 0.417 MYAHFNSNNIPLLSTPFVQQNSIHDFTEFDSFQDTLSQLNNSELSSGYSSYGGSPSPTPSTPIFMQRSISSHSLYHNNGTRHHPLSAFFAELLGSEDTPVRKVSSTGDLQRVKRMQHNHHHHVDSPLSSESSMIIEGMNRVCPYSPEEKKLRIERYKRKRNQRNFNKKIKYVCRKTLADRRPRIRGRFARNGEIDTNNTSVQWSHIGGGEEEDEEDENWINVFDSIVAANLVHDEFQGSSSFGLLY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6475 246 Pfam CCT motif 151 191 IPR010402 GO:0005515
Psa5g6475 246 ProSiteProfiles CCT domain profile. 149 191 IPR010402 GO:0005515
Psa5g6475 246 PANTHER CCT MOTIF PROTEIN 3 246 - -
Psa5g6475 246 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 246 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6475 Psa-Chr5 547667071 547668574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6475 137 207 C2C2-CO-like Transcription Factor Family AT5G24930 42.254 1.32e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Psa5g6475 CCT 7.6e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6475 - - gmx:100820236 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6475 5 547667071 547668574 Psa5g6475 5 547667071 547668574 ECH
Psa5g6475 5 547667071 547668574 Psa7g5064 7 444417675 444419927 PCT