Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6466 ATGGAGCATTTGAAGAAATCTCCATCTTCTTCATCATCGTCATCAATGAGACCATCATTTCCAAGAGATCCTCGCGGCTCCTTAGAAGTCTTCAATCCAACCAGCAACTCCAGCTCGCCGGTACGCTCACCGTCAAACCTGAAAAATTGGACGGAAATCGAAGAGCCGCGCAACGAATTATCCGAGCAACATAACGAATTCTCCGATGAAGTCACCAACACTTCCTGGATGGCAATCAAGGAAGGAGAAACCGGTGCCGCAGTACAGAGAGCCGCCGAGTGGGGATTGATGCTCACGACAGATGCTGAAACTGGAAAACCACAAGGAGTGGCAGTTCGAAACTCCGGCGGAGACGAGCCGAGTGTCAAACTTGAAACGAAACGAAACTCCAATAACACCGTCAGAACTTCCGGTGAGTCTTCCGACGGTGATGATCCCCGCGGGTTTCCGAGAGTTTCGGAGGATTTAAAAGATGCTTTATCGGCTTTTCAACAAACTTTCGTGGTCTCGGATGCTACCAAACCCGATTACCCGATTTTGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACATCAAAAGAAGTCATAGGAAGAAACTGTCGGTTTTTACAGGGTGCGGATACGGATCCGGATGACGTGGCAAGGATAAGGGAGGCGTTGGAAGGTGGGAAAAGTTTTTGTGGAAGGTTACTTAATTACAAGAAGGATGGAACTCCTTTCTGGAACCTTCTCACTATTTCACCCATCAAGGATGATGATGGCAATGTGCTCAAGTTAATTGGAATGCTGGTGGAGGTTAACAAACATACCGAGGGGTCCAAAGAGAAAAAGCTGCGTCCAAATGGATTGCCAGAATCCTTAATTCGATATGACGCTCGTCAGAAAGAGAAGGCTACATCTTCTGTATCTGAGTTATTAGAAGCCATGAAGCGCCCCCGGGCATTGAGTGAATCCGGACAACGTCCCTTTATCAGAAAATCAGGAGGAGGTGGAGGTTCCGAAGAAGATGAAGAAGCAGTAGAAAACAAATCAAGGAGAAAATCTGATAGTGTAGCTTCTTTTAGACCAAAACCACAAGGAAAAATTAGACATTCTATGGAACGAATCAGTGAGCTGCCTGAAAATAAACAGAAAAACTCTCGTCGTGGTTCTTTCATGGGGTTCATGAGGAAAAGTGATTCCATTGATGAAAGTATAGATAATGAAGTTATTGTAGATGTGAGCTCTGGGAGTGAGGATGATGAGAGGGACGATAGTTTTGAATTTGATGACAAAGAAAAACTGAGGGAAAAGAGAAAAGGTCTTGATCTTGCAACTACACTAGAGCGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCTGACAATCCTATAATCTTCGCTTCTGATAGTTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAAAAATTGCAGGTTTCTGCAAGGACCAGAAACTGATCCAGCAACTGTGAGAAAAATCAGAGAGGCAATTGACAACCAAACAGAAGTAACCGTGCAACTAATCAATTATACAAAAAGTGGGAAAAAGTTCTGGAACTTGTTTCATTTACAACCTATGCGTGATCATAAGGGAGAGGTACAATACTTTATCGGTGTTCAACTCGATGGTAGTCAACATGTAGAGCCTCTTCACAATTGCATTGCAGAAGATACTGCAAAGGAGGGAGAACTATTGGTAAAAGAAACGGCAGAAAATGTTGGTGAGGCAGTGAAAGAGCTTCCTGATGCTAATCAGAAACCGGATGATTTATGGATGAATCATTCAAAAGTGGTTCGCCCCAAACCTCATAGGAAGGATGATGATGCTTGGAGAGCAATCCAAAAGGTTTTAGAAAATGGAGAACAGGTAGGCCTAAAACACTTTAGGCCAATTAAACCTTTGGGGTCTGGAGACACCGGAAGTGTGCATCTGGTGGAGCTAGAAGGAACTGGTCAATACTTTGCAATGAAAGCTATGGATAAGGGTGTTATGCTCAATCGCAATAAGGTGCATAGAGCTTGCACTGAAAGAGAAATCCTTGACATGTTGGATCACCCTTTTCTTCCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTATTATCCTGGGGGAGAACTATTCCTGCTTCTTGACCAGCAGCCAACAAAGGTTCTCAAGGAAGATTCTGTGAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTATCTTCATTGTCTAGGCATAATTTACCGGGATTTGAAGCCAGAAAATGTGCTGATCCAGAGCAACGGACATGTGTCTCTAACAGATTTTGATCTATCATGTTTAACATCTTGCAAGCCACAGCTTATACTTCCAGCTATAGAGGAAAAGAAGAAGAGGAAGAAGAAAAAGAACAAGGGACAACAAAAAAATCAACAGGTTCCAATGTTCATGGCTGAACCAATGAGAGCATCCAATTCTTTTGTTGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCTGTAGATTGGTGGGCTCTAGGTATTCTTCTATATGAAATGCTTTATGGATATACACCATTCAGAGGAAAGACAAGACAAAAGACATTTGCAAACATTCTTCACAAAGATCTTAAGTTTCCCAAAAGCAAACCGGTAAGTCCCCATGGAAAGCAATTAATTTACTGGCTATTGCACAGAGATCCCAAGAACAGATTGGGTTCCCTTGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTCAAGAATATCAATTGGGCTCTAGTTCGTTGCACGAAACCTCCTGAGCTTGATGGTCCTATCTTACTGGACAATGATGAGAAGAAAGAAGCCAAAGAAATTGACCCTGGCTTAGATGATTTACAGAAAAATATTTTCTGA 2931 0.4231 MEHLKKSPSSSSSSSMRPSFPRDPRGSLEVFNPTSNSSSPVRSPSNLKNWTEIEEPRNELSEQHNEFSDEVTNTSWMAIKEGETGAAVQRAAEWGLMLTTDAETGKPQGVAVRNSGGDEPSVKLETKRNSNNTVRTSGESSDGDDPRGFPRVSEDLKDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVARIREALEGGKSFCGRLLNYKKDGTPFWNLLTISPIKDDDGNVLKLIGMLVEVNKHTEGSKEKKLRPNGLPESLIRYDARQKEKATSSVSELLEAMKRPRALSESGQRPFIRKSGGGGGSEEDEEAVENKSRRKSDSVASFRPKPQGKIRHSMERISELPENKQKNSRRGSFMGFMRKSDSIDESIDNEVIVDVSSGSEDDERDDSFEFDDKEKLREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGKNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDHKGEVQYFIGVQLDGSQHVEPLHNCIAEDTAKEGELLVKETAENVGEAVKELPDANQKPDDLWMNHSKVVRPKPHRKDDDAWRAIQKVLENGEQVGLKHFRPIKPLGSGDTGSVHLVELEGTGQYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYYPGGELFLLLDQQPTKVLKEDSVRFYAAEVVIALEYLHCLGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLILPAIEEKKKRKKKKNKGQQKNQQVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNINWALVRCTKPPELDGPILLDNDEKKEAKEIDPGLDDLQKNIF* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6466 976 Pfam PAS domain 173 268 IPR000014 -
Psa5g6466 976 Pfam PAS domain 458 550 IPR000014 -
Psa5g6466 976 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Psa5g6466 976 ProSitePatterns Protein kinases ATP-binding region signature. 642 665 IPR017441 GO:0005524
Psa5g6466 976 SUPERFAMILY PYP-like sensor domain (PAS domain) 451 550 IPR035965 -
Psa5g6466 976 CDD STKc_phototropin_like 634 950 - -
Psa5g6466 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672|GO:0006468
Psa5g6466 976 Gene3D Transferase(Phosphotransferase) domain 1 720 942 - -
Psa5g6466 976 ProSiteProfiles PAC domain profile. 509 563 IPR000700 -
Psa5g6466 976 MobiDBLite consensus disorder prediction 29 51 - -
Psa5g6466 976 MobiDBLite consensus disorder prediction 102 152 - -
Psa5g6466 976 MobiDBLite consensus disorder prediction 52 66 - -
Psa5g6466 976 SMART serkin_6 636 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6466 976 SMART pas_2 154 223 IPR000014 -
Psa5g6466 976 SMART pas_2 437 506 IPR000014 -
Psa5g6466 976 SUPERFAMILY Protein kinase-like (PK-like) 624 946 IPR011009 -
Psa5g6466 976 CDD PAS 179 268 IPR000014 -
Psa5g6466 976 Gene3D PAS domain 166 321 - -
Psa5g6466 976 CDD PAS 450 550 IPR000014 -
Psa5g6466 976 ProSiteProfiles Protein kinase domain profile. 636 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6466 976 ProSiteProfiles PAS repeat profile. 152 223 IPR000014 -
Psa5g6466 976 Gene3D PAS domain 424 588 - -
Psa5g6466 976 TIGRFAM sensory_box: PAS domain S-box protein 460 550 IPR000014 -
Psa5g6466 976 TIGRFAM sensory_box: PAS domain S-box protein 179 272 IPR000014 -
Psa5g6466 976 Pfam Protein kinase domain 638 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6466 976 Gene3D Phosphorylase Kinase; domain 1 635 719 - -
Psa5g6466 976 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Psa5g6466 976 MobiDBLite consensus disorder prediction 403 422 - -
Psa5g6466 976 SMART pac_2 229 271 IPR001610 -
Psa5g6466 976 SMART pac_2 512 554 IPR001610 -
Psa5g6466 976 MobiDBLite consensus disorder prediction 1 74 - -
Psa5g6466 976 ProSiteProfiles PAS repeat profile. 435 508 IPR000014 -
Psa5g6466 976 MobiDBLite consensus disorder prediction 332 354 - -
Psa5g6466 976 PANTHER PHOTOTROPIN-1 103 976 - -
Psa5g6466 976 PANTHER FLIPPASE KINASE 1-RELATED 103 976 - -
Psa5g6466 976 MobiDBLite consensus disorder prediction 362 380 - -
Psa5g6466 976 MobiDBLite consensus disorder prediction 312 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6466 Psa-Chr5 546992970 547001760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6466 8 976 AGC Kinase Gene Family AT3G45780 68.478 0.0 1322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Psa5g6466 Pkinase 5.6e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6466 5 546992970 547001760 Psa5g6466 5 546992970 547001760 ECH
Psa5g6466 5 546992970 547001760 Psa7g5068 7 445082899 445090565 PCT