Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6461 ATGAGTTGTTTTCGTTGTGTTGGAAAAACACGCCAAAATAATCAAACAAACCATTCTAGCCGTAGAGAGAATCACACTAATATCACTTCAGCTGATAAGGTCAAAGTTGATTTGAATTTGAGTGTGAATGATAAAAAGGAAGATGAATCTAAACATGATCAACTTTCCCTGGACGTGAAGAATTTGAATTTGAAAGACGGGGTTTCCGGAGATGGAAAAGTTGCAAAGACGTTTACTTTCCAAGAACTCGAAGCTGCAACAGGGAATTTTAGGTCAGATTGCTTTGTCGGCGAAGGAGGGTTTGGGAAGGTTTATAAGGGTAACATCCAGAGAATAAACCAGGTTGTTGCGATAAAGCAGCTCGACCCGAATGGTCTTCAAGGGATCAGGGAGTTTGTCGTTGAAGTGTTGACGCTTAGTTTGGCAGATCACCTGAATCTCGTCAAGCTATTAGGGTTTTGTGCCGAGGGAGAGCAGAGACTATTGGTTTACGAGTACATGCCATTGGGATCTTTGGAGAATCATTTGCATGATCTTTCGGCCGGAAAAAAGCCGCTGGATTGGAATACAAGGATGAGAATCGCGGCTGGTGCAGCTAGAGGTTTGGAGTATTTGCATGACAAGATGAAGCCTCCTGTCATATACCGTGACCTCAAATGCTCCAACATTTTGTTAGGCGAAGATTATAATCCAAAGCTATCTGATTTCGGCTTGGCAAAAGTTGGCCCGATTGGTGACAAGACTCATGTTTCTACTAGAGTTATGGGCACGTATGGATACTGTGCTCCGGATTACGCAATGACGGGTCAATTGACGTTCAAGTCTGATATTTACAGCTTTGGAGTTGTTCTTTTGGAGCTCATCACAGGCAGAAAGGCTATCGATCATAGAAAACCTGCTAAAGAACAAAACCTAGTTGCATGGGCAAGGCCGTTATTCAGAGACCGACGAAGATTCTCAGAGATGGTAGATCCATTGCTTGAAGGTCATTATCCAGTGAGGGGTTTGTACCAAGCTCTTGCCATTGCGGCAATGTGTGTTCAAGAGCAACCTAATATGCGTCCTGTTGTAGCTGATGTGGTTACGGCTCTAAATTACCTTGCTTCGCAAAAGTATGATCCACAAACTCATGCGATACAAAGACCGAGAAAAAGCTCATCTTCTTCGAGAGGCAGTAGCGCAGGTCATAGACGTGTTACCAGTAATGATTCCGAGACAGACAGAATCGGAGATTAG 1236 0.4361 MSCFRCVGKTRQNNQTNHSSRRENHTNITSADKVKVDLNLSVNDKKEDESKHDQLSLDVKNLNLKDGVSGDGKVAKTFTFQELEAATGNFRSDCFVGEGGFGKVYKGNIQRINQVVAIKQLDPNGLQGIREFVVEVLTLSLADHLNLVKLLGFCAEGEQRLLVYEYMPLGSLENHLHDLSAGKKPLDWNTRMRIAAGAARGLEYLHDKMKPPVIYRDLKCSNILLGEDYNPKLSDFGLAKVGPIGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHRKPAKEQNLVAWARPLFRDRRRFSEMVDPLLEGHYPVRGLYQALAIAAMCVQEQPNMRPVVADVVTALNYLASQKYDPQTHAIQRPRKSSSSSRGSSAGHRRVTSNDSETDRIGD* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6461 411 MobiDBLite consensus disorder prediction 374 411 - -
Psa5g6461 411 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6461 411 PANTHER OS07G0668900 PROTEIN 1 395 - -
Psa5g6461 411 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Psa5g6461 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Psa5g6461 411 CDD STKc_IRAK 96 365 - -
Psa5g6461 411 MobiDBLite consensus disorder prediction 374 399 - -
Psa5g6461 411 Coils Coil 45 65 - -
Psa5g6461 411 Gene3D Phosphorylase Kinase; domain 1 75 166 - -
Psa5g6461 411 MobiDBLite consensus disorder prediction 1 28 - -
Psa5g6461 411 Gene3D Transferase(Phosphotransferase) domain 1 167 388 - -
Psa5g6461 411 Pfam Protein kinase domain 95 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6461 411 SUPERFAMILY Protein kinase-like (PK-like) 76 391 IPR011009 -
Psa5g6461 411 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g6461 411 SMART serkin_6 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6461 411 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6461 Psa-Chr5 546876587 546878675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6461 1 369 Glycoside Hydrolase AT3G07070 54.570 8.14e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Psa5g6461 Pkinase 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6461 - - gmx:100794680 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6461 5 546876587 546878675 Psa5g6461 5 546876587 546878675 ECH
Psa3g3306 3 281127976 281131311 Psa5g6461 5 546876587 546878675 ECH
Psa6g2857 6 233705291 233709419 Psa5g6461 5 546876587 546878675 ECH