Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6449 ATGGGAAGAGCTCCTTGTTGTGACAAAGCAAATGTGAAGAAAGGACCATGGTCACCAGAGGAAGATTCAAAGCTCAAAGAGTATATAGAAAAAAATGGAACTGGTGGAAATTGGATTTCTCTTCCTCAAAAAGCTGGTCTAAGAAGATGCGGAAAAAGTTGCAGATTGAGATGGCTTAACTATTTAAGGCCAAACATTAAACATGGAGAATTTTCAGATGAAGAAGACAGAATCATTTGCACCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATTGCTGCTCAGTTACCTGGAAGAACTGATAATGATATAAAAAACTACTGGAACACAAAACTCAAGAAGAAGCTTATGAGTTTTCTTCCTCAATCTCATACCACACTCTTACCCTATCAAAACCCTACTCCATATTACAACCAATTTTCACAGCCAAACACATCTTTCACCACAAACCTTGAACAAATCTCTCTCCCTTTTTACCATAACCAAGAGTCTTTGCTCAGTGGTGTTAGCACTAGTACTAGTAGTGTTACTGTTACTTCCATGCAATATCATCATCATCATCATCCTATGAGAGAGAGTTTGGCCATGTTTGGAAGTGAGGGAAGTTGTTGCAGTTCATCAGAAGGAAGTTTTGGGAAACAAGAAGAAATAATGGGGTTTCAGAATCTCATGCAAAACAGCAACATGATCAATCTGAGTCATGGAAGTGATGTTAACCAATGGGAAACTGAAACAGAAAAAGTGAACCTGTGCTTTAGTCAAAATCAGAAGCAAATTCCAAGTTCTTTAGGGTATGATCTTGAGTATATTAAGCAATTAATTAGTAGTGATAATGGTTACTTGAGTATTGATGAAAACAAGACTGAGGAGAAGAGTATGTACTACTACTACTGA 897 0.3724 MGRAPCCDKANVKKGPWSPEEDSKLKEYIEKNGTGGNWISLPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLMSFLPQSHTTLLPYQNPTPYYNQFSQPNTSFTTNLEQISLPFYHNQESLLSGVSTSTSSVTVTSMQYHHHHHPMRESLAMFGSEGSCCSSSEGSFGKQEEIMGFQNLMQNSNMINLSHGSDVNQWETETEKVNLCFSQNQKQIPSSLGYDLEYIKQLISSDNGYLSIDENKTEEKSMYYYY* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6449 298 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Psa5g6449 298 SMART sant 67 115 IPR001005 -
Psa5g6449 298 SMART sant 13 64 IPR001005 -
Psa5g6449 298 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Psa5g6449 298 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Psa5g6449 298 CDD SANT 16 62 IPR001005 -
Psa5g6449 298 Gene3D - 7 68 - -
Psa5g6449 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Psa5g6449 298 PANTHER TRANSCRIPTION FACTOR RAX3 1 279 - -
Psa5g6449 298 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Psa5g6449 298 Gene3D - 70 130 - -
Psa5g6449 298 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Psa5g6449 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Psa5g6449 298 CDD SANT 70 113 IPR001005 -
Psa5g6449 298 PANTHER OS09G0431300 PROTEIN 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6449 Psa-Chr5 546337935 546339677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6449 1 118 MYB Transcription Factor Family AT5G65790 88.136 1.32e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Psa5g6449 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6449 K09422 - gmx:100796382 331.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6449 5 546337935 546339677 Psa5g6449 5 546337935 546339677 ECH