Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6445 ATGCAGAGATCAGGTTACGGTTCCGATGGAATATACCGCTCTCTAAGACCTTCCCTTACCTTACCAAAAAACCCGAACCTCTCTCTCGTCACACACCTTTTCAACAACGTTGCTTCTTCCCTATCCAAAACCGCTCTAATAGATGCTGATTCTAATCAATCACTTACCTTTGCTCAATTAAAATCCCTCACAATTAAACTCTCACACGCTCTTATCCACATCGGTGTAAAAAAAACCGATGTCGTTCTCTTCCTCGCTCCCAATAGTTACCTCTACCCCGTTCTCTTCCTCGCCGTCACTTCCATCGGCGCAATCGCTTCCACCGTCAACCCCGCCTACACCACCGCCGAAGTCTCCAAACAAGCTAAAGATTCAAATCCTAAAATCATCGTCACCGTCGCTGAGTTATGGGAGAAAGTCAAACACCTCGACCTCCCCGCCGTTAAGTCTCCAAACAAGCTAAAGATTCAAATCCTAAAATCATCGTCACCGTCGCTGAGTTATGGGAGAAAGTCAAACACCTCGACCTCCCCGCCGTATTTCTCAATTCCGACGCTGGGGCGTTTCGAATCGTTCGTCAAACTCGGGGAATCCGGTACAGAGTTTCCGAAAGTTGACGTGAAACAAAGCGATACGGCGGCGCTTTTGTATTCCTCTGGGACAACTGGTTTGAGCAAAGGCGTGATTCTGACTCACGGGAATTTCATTGCTTCCGCGTTGATGATTACAATGGATGATGAACTGAATGGGGAAATAAACGATGTGTATCTCGTTGTTCTTCCAATGTTTCATGTTTTTGGACTTGCGGTTATTACTTGCTCGCAGCTTCAGAGAGGTAACGCTGTGGTTTCGTTGAAGAAGTTTGAGTTTGAAGTTGTTTTGAAAACGATTGAGAAGTTTAGGGTTACGAAGTTATGGGTTGTGCCTCCTATTATACTTGCTCTTGCTAAGCATAGTTTGGTTGATAAGTATGATCTTTCTTCTTTGAAGTATGTTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGCAAGAGTGCGCGAAGCGATTCCCTCGCGCGATTATTTCTCAGGGCTATGGTATGACTGAAACTACTGGGATTGTTTCTGTGGAGAATACAAGGATGGGGATTAGGCACACTGGTTCAACTGGAATGCTTGTTGCTGGAGTGGAAGCTCAAATTGTTAGTGTGGATACATTGAAGCCACTCCCTCCTGGACAGCTTGGGGAGATATGGGTACGGGGTCCGAATATGATGCGAGGTACGCAGCAATGTAGCGTTTAG 1287 0.4608 MQRSGYGSDGIYRSLRPSLTLPKNPNLSLVTHLFNNVASSLSKTALIDADSNQSLTFAQLKSLTIKLSHALIHIGVKKTDVVLFLAPNSYLYPVLFLAVTSIGAIASTVNPAYTTAEVSKQAKDSNPKIIVTVAELWEKVKHLDLPAVKSPNKLKIQILKSSSPSLSYGRKSNTSTSPPYFSIPTLGRFESFVKLGESGTEFPKVDVKQSDTAALLYSSGTTGLSKGVILTHGNFIASALMITMDDELNGEINDVYLVVLPMFHVFGLAVITCSQLQRGNAVVSLKKFEFEVVLKTIEKFRVTKLWVVPPIILALAKHSLVDKYDLSSLKYVGSGAAPLGKELMQECAKRFPRAIISQGYGMTETTGIVSVENTRMGIRHTGSTGMLVAGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMRGTQQCSV* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6445 428 SUPERFAMILY Acetyl-CoA synthetase-like 23 422 - -
Psa5g6445 428 Gene3D - 9 425 IPR042099 -
Psa5g6445 428 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 423 - -
Psa5g6445 428 Pfam AMP-binding enzyme 36 422 IPR000873 -
Psa5g6445 428 ProSitePatterns Putative AMP-binding domain signature. 215 226 IPR020845 -
Psa5g6445 428 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6445 Psa-Chr5 546213612 546215023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6445 1 422 Monolignol Biosynthesis Gene Families AT4G05160 60.190 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6445 K01904 - gmx:100797843 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6445 5 546213612 546215023 Psa5g6445 5 546213612 546215023 ECH