Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6440 ATGTCTCAACCAGAATCATCTGATTCGAAATCGGTGAAAAAGGACTTCTCCACCGCGATTCTGGAACGCAAGAAATCTCCTAACCGACTTGTCGTTGATGAGGCTGTCAACGACGACAACTCCATTGTCGCTATGCACCCACAAACCATGGAAACCTTGGGGCTTTTCCGTGGTGACACTGTCCTTATCAAGGGAAAGAAACGGAAGGATACTATTTGTATATCGCTGTCTGATGATACCTGCGAAGAGGCTAAGATAAGGATGAACAAAGTTGTGAGGTCGAATTTGCGAGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGTCCTGATGTTAAGTATGGGAAACGTGTGCATATTCTTCCTGTTGATGATACAATTGAAGGTCTCACTGGAAATCTCTTTGATGCTTTCTTGAAACCCTATTTCTTGGAGGCTTATCGTCCTGTCAGGAAAGGAGAACTATTTCTTGTGCGGGGAGGGATGAGAAGCGTAGAGTTTAAGGTCATTGAAACTGATCCTGGGGAGTATTGTGTGGTTGCTCCAGACACTGAGATTTTTTGCGAGGGGGAACCTGTGAATAGAGAAGATGAAGACAGGCTTGATGAAATTGGTTATGATGATGTGGGTGGTGTTAGGAAGCAAATGGCACAGATTCGCGAGTTGGTTGAGCTTCCACTGAGGCATCCACAACTTTTCAAATCCATTGGTGTGAAACCACCCAAAGGAATTTTGCTATATGGACCCCCAGGTTCTGGAAAGACATTAATAGCTAGAGCTGTTGCTAATGAAACTGGAGCTTTCTTCTTTTGCATCAATGGACCTGAGATTATGTCCAAACTGGCCGGTGAGAGTGAAAGCAATCTTAGGAAAGCATTTGAGGAAGCTGAAAAGAATGCACCATCCATCATCTTTATTGATGAGCTTGATTCTATTGCACCCAAGCGGGAGAAGACACACGGTGAAGTTGAAAGAAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCCCGTGCTCATGTTATTGTCATGGGTGCCACTAATCGTCCAAATAGCATTGACCCAGCTTTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCTGATGAAATTGGGCGACTTGAAGTCCTTCGCATACATACCAAAAACATGAAGCTCTCTGATGATGTTGATTTGGAAAGAATTGGAAAAGATACTCATGGGTATGTTGGGGCTGACCTTGCTGCCCTTTGCACTGAAGCGGCTTTGCAATGCATTAGGGAGAAGATGGATGTCATTGATTTAGAGGATGAAACAATTGATGCTGAAATTTTAAATTCCATGGCCGTTACAAATGAACATTTCCAGACTGCCCTTGGAACAAGCAACCCTTCAGCTTTACGTGAAACTGTTGTTGAGGTGCCTAATGTTAGTTGGGAAGACATCGGAGGCCTTGAGAATGTCAAGCGTGAACTGCAAGAGACTGTTCAATATCCTGTTGAGCACCCGGAAAAGTTTGAGAAGTTTGGGATGTCACCATCAAAAGGAGTTCTCTTCTATGGTCCTCCAGGATGTGGAAAAACATTGTTAGCCAAAGCAATTGCTAACGAATGTCAAGCTAACTTCATCAGTGTGAAAGGCCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCCAATGTTAGAGAGATTTTTGACAAGGCCAGACAATCAGCTCCATGTGTCCTCTTTTTTGATGAGCTTGACTCCATTGCTACTCAGAGAGGAAGTAGTGTTGGGGATGCTGGTGGTGCTGCCGACAGAGTTCTAAATCAACTTCTGACTGAAATGGATGGCATGTCTGCTAAAAAGACTGTGTTCATTATCGGGGCAACTAACAGACCTGATATCATTGATCCCGCACTTCTTCGGCCAGGCCGTCTAGATCAATTGATCTATATTCCTCTTCCTGATGAGGATTCCCGTCATTCGATCTTCAAGTCCTGCTTGAGAAAGTCACCAATTGCGAAAGATGTTGATTTGAGAGCATTGGCTAGGTATACACAAGGTTTCAGTGGTGCCGACATTACAGAAATATGCCAGCGAGCATGCAAATATGCTATAAGAGAAAACATTGAAAAGGACATAGAGCAAGAGAGGAAAAGGAAGGAAAACCCTGAGGCCATGGATGAAGACCTTATCGACGAAGAAGTTGCAGAGATCAAGGCGGCTCATTTCGAGGAGTCAATGAAGTATGCACGTAGGAGTGTTAGTGACGCCGATATACGCAAGTACCAAGCATTTGCTCAAACCTTACAACAATCGAGAGGGTTCGGAAGTGAATTTAGGTTCTCAGATACTGGAAATAGAACTACTACTGAATCTGACCCTTTTGCAACTACTGCTGCTGGTGGAGCTGAGGAAGATGATCTGTATAGTTAG 2424 0.4369 MSQPESSDSKSVKKDFSTAILERKKSPNRLVVDEAVNDDNSIVAMHPQTMETLGLFRGDTVLIKGKKRKDTICISLSDDTCEEAKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGLTGNLFDAFLKPYFLEAYRPVRKGELFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPVNREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLERIGKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHSIFKSCLRKSPIAKDVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIEQERKRKENPEAMDEDLIDEEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSDTGNRTTTESDPFATTAAGGAEEDDLYS* 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6440 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 475 764 IPR027417 -
Psa5g6440 807 ProSitePatterns AAA-protein family signature. 620 638 IPR003960 GO:0005524|GO:0016887
Psa5g6440 807 SMART CDC48_2_2 129 195 IPR004201 -
Psa5g6440 807 Pfam Cell division protein 48 (CDC48), domain 2 130 193 IPR004201 -
Psa5g6440 807 Gene3D - 654 763 - -
Psa5g6440 807 SUPERFAMILY Cdc48 domain 2-like 111 203 IPR029067 -
Psa5g6440 807 SMART CDC48_N_2 29 112 IPR003338 -
Psa5g6440 807 MobiDBLite consensus disorder prediction 773 793 - -
Psa5g6440 807 CDD AAA 483 650 - -
Psa5g6440 807 PANTHER AAA-FAMILY ATPASE 4 781 - -
Psa5g6440 807 Gene3D - 209 373 IPR027417 -
Psa5g6440 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 465 IPR027417 -
Psa5g6440 807 ProSitePatterns AAA-protein family signature. 344 362 IPR003960 GO:0005524|GO:0016887
Psa5g6440 807 MobiDBLite consensus disorder prediction 773 807 - -
Psa5g6440 807 CDD AAA 210 373 - -
Psa5g6440 807 Gene3D - 467 650 IPR027417 -
Psa5g6440 807 Gene3D - 375 466 - -
Psa5g6440 807 Gene3D - 6 111 - -
Psa5g6440 807 TIGRFAM CDC48: AAA family ATPase, CDC48 subfamily 30 767 IPR005938 GO:0016787
Psa5g6440 807 Pfam AAA+ lid domain 672 713 IPR041569 -
Psa5g6440 807 Pfam AAA+ lid domain 396 438 IPR041569 -
Psa5g6440 807 SUPERFAMILY ADC-like 25 109 IPR009010 -
Psa5g6440 807 SMART AAA_5 513 652 IPR003593 -
Psa5g6440 807 SMART AAA_5 240 376 IPR003593 -
Psa5g6440 807 Pfam Cell division protein 48 (CDC48), N-terminal domain 29 110 IPR003338 -
Psa5g6440 807 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Psa5g6440 807 Pfam ATPase family associated with various cellular activities (AAA) 517 650 IPR003959 GO:0005524|GO:0016887
Psa5g6440 807 Gene3D - 112 208 - -
Psa5g6440 807 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 4 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6440 Psa-Chr5 545952241 545956549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6440 446 709 Calmodulin-binding Proteins AT3G56690 48.106 8.74e-80 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6440 K13525 - gmx:100783508 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6440 5 545952241 545956549 Psa5g6440 5 545952241 545956549 ECH