Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6439 ATGCCGGCTGGTCATGGTTTGAGATCTCGCACCAGAGATTCCTTCTCTCGCCCATTCAGGAAGAAGGGTACAATCGCCCTAGCCACCTACCTCAGAACCTACCACATCGGCGATTATGTTGATATCAGGGTTAACGGCGCCGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGACGTACCGGCCGTGTCTGGAATGTCACCAAACGCGCCATTGGCGTTGAGGTTAACAAACAGGTTAGGAACAAGATTCTGAGGAAGAGGATTCATGTTCGTGTGGAGCATGTTATGCCTTCTAGGTGCACTGAGGAGTTTCGTTTGAGGAAGATCAACAATGATAAACTCAAGGCAGAGGCTAAGGCTAAGGGTGAGGTTATTAGCACAAAGCGCAAGCCAGAGGGACCTAAGCCTGGTTTCAAGGTTGAAGGAGCTACTTTGGAAACTGTTACTCCAATTCCTTATGATGTGGTTAATGATTTGAAGGGAGGATACTAG 495 0.4808 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKINNDKLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6439 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Psa5g6439 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Psa5g6439 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Psa5g6439 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Psa5g6439 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Psa5g6439 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Psa5g6439 164 Gene3D - 99 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6439 Psa-Chr5 545874150 545875423 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6439 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G57860 79.878 4.81e-100 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6439 K02889 - gmx:100305629 318.931