Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6437 ATGGGGTTTGATAATCCAAGATCTGAGAGGTTTGAAGATGATTCTGATATTTCAAAAACTCCAACAACAAATGGTGTTAAAGTGAAATACCACATTGATGGATCACAAATACCAGAACCAAGTTCAAGAAAGTCTCAAAAAAAGGTTACCAGAAACAAGTTTTTGAAAACAAGAGTGTTATCAAGAGTATTCTCAGAGGATTATGAAAGAGTAAAAAAGAGAGTATTAGTGTTAGATCCTAGGGGACAAGTAATTCATCGTTGGAACAAGATATTTCTGGTAGCGTGTTTAGTTTCTTTGTTTGTGGATCCTCTTTTCTTTTATTTGCCTGTAGTTAGAGAAGAAGTTTGCATCGATATTGGTAAAAATCTCGAAGTTGTCCTCACAGTTGTTAGATCAGTTGGGGATTTGTTTTACATGATTCAGATTTTCATGAAGTTTCGTACCGCGTATGTTGCTCCTTCGTCCAAGGTTTTCGGTAGAGGAGAACTTGTTCTTACCTATTCGAAGATCGCTGTTAGGTACTTCAGCAAGGGTTTTTGGTTAGACTTTATTGCTGCATTGCCTCTTCCTCAGGTGTTGATTTGGATTATCATCCCAACGCTTAGGGGTTCGACAATGGCGAACACGAAAAACGTCCTTCGTTTTTTCATCATTTTCCAATATATTCCAAGACTATATTTGATTTTTCCACTTTCGTCGCAAATTGTAAAAGCTACCGGGGTTGTGACAGAAACAGCATGGGCAGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCCAGCCATATTTTAGGAGCTTGCTGGTACCTTTTATCGATTGAGCGTCAAGAAGCCTGTTGGAGAAGCGTGTGCAATATGGAGAAACCGAATTGTGAATATGGATTCTTTGATTGTCATAGAGTTAAAGATGCTTTGAGGGTCAATTGGTTTGTGTCTAGTAATGTCACAAATTTATGTTCACCAAGTGCTGGCTCTTATCAGTTTGGTATATATGCTGATGCCATGACTTCCCAAGTTACATCCTCACCATTCTTTAATAAGTACTTCTTTTGTCTTTGGTGGGGCTTAAGGAATCTCAGTTCTTTAGGACAAGGCCTACTTACTAGCACTTTTATTGGAGAAATCATGGTTGCCATTGTTGTTGCAACTCTTGGATTGGTTCTTTTTGCGTTGCTGATTGGTAATATGCAGACATACCTTCAATCGATAACTGTTCGCCTAGAAGAGTGGAGGGTGAAAAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTTCAGAACTAAGAGAGTCTATTCGGAAATATAATCAATATAAATGGGTGGCTACACGAGGAGTAGAAGAAGAAGATCTTCTCAAAGGACTCCCATTGGATCTTAGGAGAGACATCAAACGACACCTTTGTCTTGAACTAGTTCGAGGAGTTCCGTTGTTTGATCAAATGGATGAGAGGATGCTAGACGCAATATGCGAAAGACTAAAGCCTGCATTATGCACTCAAGGAACATACCTTGTTCGCGAAGGCGATCCAGTGAACGAAATGCTCTTCATAATTAGAGGCCATCTTGATTCTTACACCACAAACGGAGGCCGTGACGGATTCTTCAACTCATGCCGTATCGGTCCAGGTGATTTCTGCGGCGAAGAACTATTGACATGGGCCTTAGATCCAAGACCAAGTGTGATACTCCCTTCATCGACAAGAACAGTTAACGCTGTCTCAGAAGTAGAAGCGTTTGCGCTCATAGCTGAAGATCTTAAGTTTGTTGCATCGCAATTTAGAAGATTACATAGTAAACAGCTTAGGCATAAGTTCAGATTTTATTCACACCAATGGAGAACTTGGGCTGCTTGTTTTATTCAAGCTGCATGGAGAAGGCACAAGAAAAGAAAAGAAGCTGCTGAATTGAGGGCTAAGGAGAATCTTATGGTAGCTTCAGAGACTGAGAGAGCAAAAAAATATGGAACAGGTTTTGTTGTTTATGAAACAAGGGTGGCAAGGAGTACTAGGAAAGGTGTGCATTTGCAGAAGCCAACAGAACCTGATTTTTCTGATGAATAA 2070 0.4014 MGFDNPRSERFEDDSDISKTPTTNGVKVKYHIDGSQIPEPSSRKSQKKVTRNKFLKTRVLSRVFSEDYERVKKRVLVLDPRGQVIHRWNKIFLVACLVSLFVDPLFFYLPVVREEVCIDIGKNLEVVLTVVRSVGDLFYMIQIFMKFRTAYVAPSSKVFGRGELVLTYSKIAVRYFSKGFWLDFIAALPLPQVLIWIIIPTLRGSTMANTKNVLRFFIIFQYIPRLYLIFPLSSQIVKATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRSVCNMEKPNCEYGFFDCHRVKDALRVNWFVSSNVTNLCSPSAGSYQFGIYADAMTSQVTSSPFFNKYFFCLWWGLRNLSSLGQGLLTSTFIGEIMVAIVVATLGLVLFALLIGNMQTYLQSITVRLEEWRVKRTDTEQWMHHRQLPSELRESIRKYNQYKWVATRGVEEEDLLKGLPLDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALCTQGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRDGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVNAVSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKEAAELRAKENLMVASETERAKKYGTGFVVYETRVARSTRKGVHLQKPTEPDFSDE* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6437 689 ProSiteProfiles IQ motif profile. 616 644 IPR000048 GO:0005515
Psa5g6437 689 CDD CAP_ED 480 611 IPR000595 -
Psa5g6437 689 Pfam Cyclic nucleotide-binding domain 503 589 IPR000595 -
Psa5g6437 689 SMART cnmp_10 480 611 IPR000595 -
Psa5g6437 689 Gene3D Helix hairpin bin 408 471 - -
Psa5g6437 689 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 688 - -
Psa5g6437 689 PANTHER - 13 688 - -
Psa5g6437 689 Gene3D - 91 406 - -
Psa5g6437 689 SUPERFAMILY Voltage-gated potassium channels 79 402 - -
Psa5g6437 689 PRINTS EAG/ELK/ERG potassium channel family signature 143 152 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g6437 689 PRINTS EAG/ELK/ERG potassium channel family signature 260 270 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g6437 689 PRINTS EAG/ELK/ERG potassium channel family signature 349 366 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g6437 689 PRINTS EAG/ELK/ERG potassium channel family signature 393 402 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g6437 689 PRINTS EAG/ELK/ERG potassium channel family signature 443 450 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa5g6437 689 Gene3D Jelly Rolls 478 598 IPR014710 -
Psa5g6437 689 Pfam Ion transport protein 88 407 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Psa5g6437 689 ProSiteProfiles cAMP/cGMP binding motif profile. 480 565 IPR000595 -
Psa5g6437 689 MobiDBLite consensus disorder prediction 1 49 - -
Psa5g6437 689 MobiDBLite consensus disorder prediction 1 17 - -
Psa5g6437 689 SUPERFAMILY cAMP-binding domain-like 410 606 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6437 Psa-Chr5 545717870 545721947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6437 49 689 Ion Channels AT2G28260 74.259 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6437 K05391 - gmx:100786868 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6437 5 545717870 545721947 Psa5g6437 5 545717870 545721947 ECH