Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6431 ATGAAGGACTCTTGGTTTTTCGACAAGAATTTTAATGGATTGTCGGATGAGATTTTCGATGAACTTCATTTTTTCGATTTTCCGTTAGAAGATGTTGAAACTAATCCCGTCGAAGATGATTGGAGTGCTCAATTTCAAAGCATTGATGAGCCGTGCTTTGATGCTTTTTCAGTGACACCAGTAGGATTGTGTGGTAAAACCAAAATTGAAAATCCACAATTTGGGAATGGCTTCTCTGCTGCTCCTTGTAATGAAATGTCCTCAATAAAAGAAGTGGCAGAGACTGCTGGACCAACATATGGAAACACTATTCCCAACCAGGATGCCGCTTTCTATGAAAAGAAAGCCGTGCGTCAGTACAGCCCTGTTTCTGTTTTCGAAGGCAGTAGTGGTGCTTCCTCAGTTGAGAATTCCACCTTTGACCTGCCCGTCGTCGTCCCAATAAAGCGTGCTCGAAGTAAGCGCCGGCGTCCCTCAAAGTCAAACCCCGTATTTTCATTTTCTTTCATACCTATTTCACCGGCATTGCAAAAATATTATAAAACACCTGTGAAGAAACAGAGAAAAAAGGAGCTCTACGTGATCTCAGGCGATGCTGAGACGGGATCTCAAGAGTCAGTTATCTTCCGAAAATGCACGCATTGCGAGATCACGAAGACTCCACAATGGAGAGAGGGACCTAACGGCCCCAAAACGCTATGCAATGCTTGCGGTGTTCGGTACAGGTCTGGCCGCCTCTATCCTGAATACCGTCCAGCAAACAGCCCCACTTTCGTCGAATCAATTCACTCAAACTGTCACAAAAAGGTTCTCGAGATGCGAGGCGGCGGTGTCATCAAAGGAGGTGCTAGGAGCTGTTCTACATCGCTGCCATCAACTCTTCCCGGAAATTCGGTAGGACAGCATTATCATGGAACTTATTGA 924 0.4535 MKDSWFFDKNFNGLSDEIFDELHFFDFPLEDVETNPVEDDWSAQFQSIDEPCFDAFSVTPVGLCGKTKIENPQFGNGFSAAPCNEMSSIKEVAETAGPTYGNTIPNQDAAFYEKKAVRQYSPVSVFEGSSGASSVENSTFDLPVVVPIKRARSKRRRPSKSNPVFSFSFIPISPALQKYYKTPVKKQRKKELYVISGDAETGSQESVIFRKCTHCEITKTPQWREGPNGPKTLCNACGVRYRSGRLYPEYRPANSPTFVESIHSNCHKKVLEMRGGGVIKGGARSCSTSLPSTLPGNSVGQHYHGTY* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6431 307 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 267 - -
Psa5g6431 307 ProSiteProfiles GATA-type zinc finger domain profile. 210 242 IPR000679 GO:0006355|GO:0043565
Psa5g6431 307 Pfam GATA zinc finger 212 245 IPR000679 GO:0006355|GO:0043565
Psa5g6431 307 Gene3D - 209 257 IPR013088 GO:0006355|GO:0008270
Psa5g6431 307 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 24 275 - -
Psa5g6431 307 CDD ZnF_GATA 211 258 IPR000679 GO:0006355|GO:0043565
Psa5g6431 307 PANTHER GATA TRANSCRIPTION FACTOR 24 275 - -
Psa5g6431 307 ProSitePatterns GATA-type zinc finger domain. 212 237 IPR000679 GO:0006355|GO:0043565
Psa5g6431 307 SMART GATA_3 206 256 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6431 Psa-Chr5 545554291 545560376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6431 14 274 C2C2-Gata Transcription Factor Family AT1G08000 39.781 2.29e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Psa5g6431 GATA 2.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6431 - - aprc:113853859 353.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6431 5 545554291 545560376 Psa5g6431 5 545554291 545560376 ECH
Psa5g6431 5 545554291 545560376 Psa7g5169 7 452414355 452417258 ECH
Psa5g6431 5 545554291 545560376 Psa7g5169 7 452414355 452417258 PCT