Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6427 ATGAAAGAAGCTGAGAAAAGCTTAGATCCACAACTATGGCACGCATGTGCAGGAGGAATGGTTCAAATGCCACCAGTGAACACTAAAGTTTTCTACTTTCCTCAAGGGCATGCAGAACATGCTCAATCCAACGTTGATTTTGGAGATTCTTTCAGAATTCCACCGCTTATCCTCTGTCGTGTAGCTTCTGTGAAATTCTTAGCCGACCCAGAAACAGATGAAGTTTTTTCAAAGATAACGTTGATTCCTTTGAGAAATTCAGAGCTTGAAAACGAAGATTCTGATACTTTTAATGGTAATGCTTCCGAGAGTTCCGAAAAGCCTGCATCTTTTGCAAAGACTTTAACTCAATCTGATGCAAACAACGGTGGAGGGTTTTCGGTTCCGAGATACTGCGCTGAAACGATTTTTCCTCGGCTCGATTACTCGGCTGAGCCCCCGGTTCAAACGGTGATTGCGAAGGACGTTCATGGCGAGGTTTGGAAGTTTAGACATATCTATAGAGGAACACCAAGGAGGCATTTGTTAACAACTGGTTGGAGTAGTTTTGTGAATCAGAAAAAGCTTGTTGCAGGTGATTCTATTGTGTTTCTGAGAGGTGAAAATGGTGAACTTTATGTTGGGATTCGTCGCGCGAAGAGAGGAATAGTGAATGGATTGGAAACACCTTCTGGGTGGAGTTCTGGTAATGGAAGTTCAGGTCTTGGAATTGGACCTTATGGTGGTGCTTTTTCGGTTTTTCTGAGGGAAGAGAATAACAAGTTGTTGAGAAATGGGATTGGTGATGGGGGTGTTGGTAGTAATTTGGGAGGTGGGAGAGTGAAAGTGAGCGGTGAATCGGTGAAAGAAGCTATGAGACTTGCTGCGAGTAACCAAACATTCGAGGTTGTTTATTATCCGAGAGCGAGTACTCCTGAGTTTTGTGTTAAGGTTTCATCTGTTAAAGCTGCTATGAGAATTCAATGGTGTTCTGGTATGAGGTTTAAAATGCCATTTGAAACCGAGGATTCTTCGAGGATTAGTTGGTTCATGGGGACTATTTCGTCTGTTCATGTTGTCGATCCGGTTCGCTGGCCTAATTCGCCTTGGAGACTTCTTCAGGTAACTTGGGACGAACCGGATTTGCTACACAATGTGAAGCGAGTAAGTCCGTGGTTGGTTGAATTAGTATCAAGCATGTCGGTGATTCATCTCTCGCCCTTTTCGCCACCGAGAAAGAAACTTCGTTTTCCACAACATCCCGATTTCCCTCTTGATGTTGTTCAGTTTCCAATACCGACGTTTTCAGGCAACCCTCTTAATCCGTTGTGTTGTCTATCTTCTTCTTCCGATCATTATAACGCTCCTGCCGCAGGCATTCAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTATCAGATCTTCGCGTAAACAACATCAACAACAATAGAATTCAGTTAGGTGTGTTTCCGAATAACCCCGAGACGATTTCTAATGATAAGAGCAAAGAAAGTTTATCATGTTTGTTGACCATAGGAAACTCTCATAAGAGAAGTTTGGAGATAAATTCTGATAGTAATGTTAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATTCTCACCGAGCAACAAATCTCTAGAAAAGCTTCTAGTGATAAAGACAAAGAGAAATGGTTTTTAAGTGATACTTCTCAATCTTCAATTTCCGAACAGTTTTCACCGGGAAAATCTTCTATTACCACAACTAGTACTACCGAGTTTTGTTGGCAACAGCTTGGATTAGATACCGGTCATTGTAAGGTTTTCTTGGAGTCAGAAGATGTAGGAAGAACCTTAGATCTGTCATGTATTGGTTCATACGAAGAACTATACAGAAAACTGGCTAAGATGTTCGGTATAGAAAGATCCGAGATGTTGAGTCGCGTACTCTATCGTGACGCGACAGGTACTGTTAAACAAACCGGTGAAGAACCCTTCAGTGACTTCATGAAAACAGCAAAAAGATTAACAATTCTGATGGATTCAGCTAGCAAGGATACTAGAAGGGTTTGTATCACAAGAGCTAGGAATGGTGAATGTGGATTAGATGCATCAAATAAGACAGGACCTATGAGCATATTTGCTTAA 2109 0.4182 MKEAEKSLDPQLWHACAGGMVQMPPVNTKVFYFPQGHAEHAQSNVDFGDSFRIPPLILCRVASVKFLADPETDEVFSKITLIPLRNSELENEDSDTFNGNASESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRGENGELYVGIRRAKRGIVNGLETPSGWSSGNGSSGLGIGPYGGAFSVFLREENNKLLRNGIGDGGVGSNLGGGRVKVSGESVKEAMRLAASNQTFEVVYYPRASTPEFCVKVSSVKAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVHVVDPVRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSSMSVIHLSPFSPPRKKLRFPQHPDFPLDVVQFPIPTFSGNPLNPLCCLSSSSDHYNAPAAGIQGARHAQIGISLSDLRVNNINNNRIQLGVFPNNPETISNDKSKESLSCLLTIGNSHKRSLEINSDSNVKRHQFLLFGQPILTEQQISRKASSDKDKEKWFLSDTSQSSISEQFSPGKSSITTTSTTEFCWQQLGLDTGHCKVFLESEDVGRTLDLSCIGSYEELYRKLAKMFGIERSEMLSRVLYRDATGTVKQTGEEPFSDFMKTAKRLTILMDSASKDTRRVCITRARNGECGLDASNKTGPMSIFA* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6427 702 SUPERFAMILY DNA-binding pseudobarrel domain 103 212 IPR015300 -
Psa5g6427 702 SMART B3_2 111 213 IPR003340 GO:0003677
Psa5g6427 702 PANTHER AUXIN RESPONSE FACTOR 2 679 - -
Psa5g6427 702 Gene3D - 321 396 - -
Psa5g6427 702 Gene3D - 109 213 IPR015300 -
Psa5g6427 702 Gene3D - 589 674 - -
Psa5g6427 702 ProSiteProfiles PB1 domain profile. 590 670 IPR000270 GO:0005515
Psa5g6427 702 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Psa5g6427 702 Pfam Auxin response factor 284 367 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa5g6427 702 MobiDBLite consensus disorder prediction 93 111 - -
Psa5g6427 702 MobiDBLite consensus disorder prediction 90 111 - -
Psa5g6427 702 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Psa5g6427 702 CDD B3_DNA 110 211 IPR003340 GO:0003677
Psa5g6427 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6427 Psa-Chr5 545184004 545187548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6427 5 672 B3 DNA Binding Superfamily AT4G30080 57.918 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa5g6427 B3 1.4e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6427 - - mtr:MTR_2g094570 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6427 5 545184004 545187548 Psa5g6427 5 545184004 545187548 ECH
Psa6g1631 6 88612673 88616721 Psa5g6427 5 545184004 545187548 ECH