Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6425 ATGAGAGATGCTAATAGCCCTGCTGGATTCCAATCAATTGCAGAGGAAACATTGACAGAGTTCCTTTCAAAGGCTACAGAAACTGCTGTCGAATGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATATTGCCATTTCTCAGTTTGCTGCAGACATATTCTCCAATGACGCTGTCTACTGCTCGGGATTTCTGGACTCTAAGATACACTACAAATCTTGACAATGGAAGTATTGTGGTTTGTGAAAGGTCACTGTCTGGTTCTGGTGCTGGCCCTAACGCCGCTGCGGCCTCACAGTTTGTGAGAGCTGAAATGCTCCCTAGTGGCTACTTGGTTCGACCATGTGAAGGTGGAGGGTCAATCATCCACATTGTAGACCACCTAGACCTACAGGCATGGAGTGTTCCAGAAGTGCTGCGGCCATACTATGAATCATCAAAAATGGTAGCTCAGAGAATGACGATTTCTGCACTTCGCTATATCAAGCAAATAGCGCAAGAAACAAGTGGTGAGGTGGTATATAGCATGGGCAGGCAACCTGCTGTTTTGAGAACTTTTAGCCAGCGGTTGATTAGAGGATTCAACGATGCTGTCAATGGATTCAATGATGATGGCTGGTCTGTTGTGCACTGTGACGGCGACGGGGGTGTTACTATTTCAGTAAATTCAATCAAGAATTTGAGCAGCACTTCTAATCCAGCAAGTTCCCTTTCACTCCTTGGAGGAATTGTCTGTGCCAAAGCTTCTATGTTACTCCAAAACACCACTCCCGCTGTTTTAGTTCGCTTTCTGAGGGAACATCGCTCAGAGTGGGCTGATTTTAGTGTTGACGCCTTTTCTGCTGCATCGCTTAAAGCTGGCACCTATGGCTACCCTGGAATGAGGTCGACGAGGTTCACCGGAAATCAAGCAATCATGCCTCTTGGACAGACAATTGAACATGAAGAGATGCTAGAAATTATCCGCCTTGAAGGCCACGCACTTGGTCAAGAAGATTCTTTTGTTTCGAGGGATGTTCATCTCTTACAGTTATGTAATGGAATTGACGAGAATGCCGTGGGAGCTTGTTCCGAGCTCATATTTGCTCCAATTGACGACATGTTCCCAGAAGATGCTCCATTGGTGCCTTCTGGTTTCCGCATTGCCCTGTTGAATTCACAGCCAGGCGATAAAAACAATGCAATGACAGCAAATCGAACCTTGGATTTGACATCGGGTCTTGAAATAGGCACGGCAACAACTCATGCCACTGGAGACGCATCGTGTCCTAACAATCGATGCGTGTTGACCGTTGCCTTCCAGTTTCCTTTTGAGAGTGGTCTGCAGGATAATGTTGCAGCCATGGCAAGTCAGTATGTCCGTCGCGTGATTTCCGCCGTGCAGGCAGTTGCTATCGCTATATCTCCATCCAATACTAACCCCACTGTTGGAGCAAAACTCTCCCCTGGCTCTCCAGAAGCCCTTACACTAGCTCAATGGATCTCCAAGAGCTATCGTAATTGTTTCGCGACGGAGCTGCTGAGATTTGAATGTCTTACCGGTGATATGGTACTAAAACATTTGTGGCATCATCCAGATGCTATTTTATGCTGTTCTTTGAAGGCGGTGCCTGTATTCATCTTCGCAAACCAGGCCGGCCTCGACATGCTGGAAACAACACTAGTGGCTCTACAAGACATCTCCCTGGACAAAATATTCGACGATCCCGCCCGCAAGAATTTGATTGGGTATTTTGCCAAACTAATGCAGCAGGGCTTTGCTTGCATGCCAGCTGGGATCTGCATGTCAACAATGGGGCGACACGCGTCATACGATCAAGCTGTCGCGTGGAAAGTGCTCGCAGAAGACAACAGCGTTCACTGTTTGGCTTTCTCTTTCATGAATTGGTCATTTATATGA 1911 0.4736 MRDANSPAGFQSIAEETLTEFLSKATETAVEWVQMPGMKPGPDSVGILPFLSLLQTYSPMTLSTARDFWTLRYTTNLDNGSIVVCERSLSGSGAGPNAAAASQFVRAEMLPSGYLVRPCEGGGSIIHIVDHLDLQAWSVPEVLRPYYESSKMVAQRMTISALRYIKQIAQETSGEVVYSMGRQPAVLRTFSQRLIRGFNDAVNGFNDDGWSVVHCDGDGGVTISVNSIKNLSSTSNPASSLSLLGGIVCAKASMLLQNTTPAVLVRFLREHRSEWADFSVDAFSAASLKAGTYGYPGMRSTRFTGNQAIMPLGQTIEHEEMLEIIRLEGHALGQEDSFVSRDVHLLQLCNGIDENAVGACSELIFAPIDDMFPEDAPLVPSGFRIALLNSQPGDKNNAMTANRTLDLTSGLEIGTATTHATGDASCPNNRCVLTVAFQFPFESGLQDNVAAMASQYVRRVISAVQAVAIAISPSNTNPTVGAKLSPGSPEALTLAQWISKSYRNCFATELLRFECLTGDMVLKHLWHHPDAILCCSLKAVPVFIFANQAGLDMLETTLVALQDISLDKIFDDPARKNLIGYFAKLMQQGFACMPAGICMSTMGRHASYDQAVAWKVLAEDNSVHCLAFSFMNWSFI* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6425 636 Gene3D - 51 175 IPR023393 -
Psa5g6425 636 SUPERFAMILY Bet v1-like 12 170 - -
Psa5g6425 636 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 54 636 - -
Psa5g6425 636 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 48 - -
Psa5g6425 636 Pfam START domain 56 166 IPR002913 GO:0008289
Psa5g6425 636 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 54 636 IPR044830 GO:0003700
Psa5g6425 636 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 48 IPR044830 GO:0003700
Psa5g6425 636 ProSiteProfiles START domain profile. 1 177 IPR002913 GO:0008289
Psa5g6425 636 Pfam MEKHLA domain 493 635 IPR013978 -
Psa5g6425 636 SMART START_1 12 168 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6425 Psa-Chr5 544900034 544903545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6425 1 636 Homeobox Transcription Factor Family AT5G60690 65.854 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6425 K09338 - gmx:100804870 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6425 5 544900034 544903545 Psa5g6425 5 544900034 544903545 ECH
Psa5g6425 5 544900034 544903545 Psa7g5163 7 451926939 451932863 ECH