Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6423 ATGCAGGATCTTGTTCAAGTTAGAAGCTTTAGAAATGGTTATTATAACCATGAGGAGCCTGTTGTTGTTTATTCATCATCAGAAAACCCTAACTTCTTTACTACTTTGAATCCTTTGGAGTATCAGGAGCAACTAGGTGGAAGTTCAGAAGAATCAAGTAGGTTATTCATGATGCAACAGCATCATCATCATCATCAACTTCATCAACAGCAGCACTATGGCTCATATGCTAATTCTTTGACTGATTTTCATTCTCCTGAACAAAAGCATGCGAGTGATTTTGAAAATTGGAGAAACAATACTGTTCAACATCAAGTCACTGATAGGTTTTTAAATAATGCAACAAATTCTCTTCCATGTGTTTATGGCGGTGATAAGCAACTAGGTCATGTCATGCATCATACTCCTACTTCTTCAACACTATATCAGAATCATTCTTTGCAAGATATTGTCAAGTCTATCACTTCTAATAGTTCAGATTCTCACATGACATCACTCATGCATCATAACAATGCTCAAGAGATTTGTGTAGTTAATGCTTCTGAACTTCAACACCAACCAAATCAGTTAGAGTTCGGATGGAAAAATCAAATAGATTCAAATCCACAAAGCTTATCTTTATCACTTTCATCTAAGGCTCATGTTTCTAGAGATTGTGGAAAACCACTTCAAGATTTGGTGGTTGGAATAATGCCTAACTCAAAGACTACTACTAGTTATGGAAATGTGGGTCCACTTGGTCCTTTCACTGGTTATGCTACTATTCTCAAGAATTCAAGATTCTTAAAGATTGCTCAAAATTTGTTGTCTGAGGTTTGCTGTCCAAAATTTGTGTCAACATGTGATGTTTCAGAGACTGAGGATGCTTCTAAAGAAAGTCATTCATGTTCTTCCTCATCTATGTTTCATGTTACAAAAGAAAATAGTTCTGATTGGGGATCCAGAAGTGGTTTTGGTGTTTCTTTGCGGCCAGATTATCAACAAAATAAAGCAAAACTTGTGTACATGCAAGAAGAGGTCAGCAGGAGATACAAGCAGTACCAACACCAAATGCAAATGGTATTTTCTTCTTTTGAATCAGTAGCGGGTCTTAATTCAGCTACTCCTTACATCACCTTGGCTTTGAAGTTAGTATCGAAACACTTCAAGTGCCTAAACAATTCTATTTCAAATCAGCTCAAACTTATTGGTGAAGTCATGCAGAATGATTCTTCCATAGCCACCACAAACAATATTACTCACTTTGCTGACACTGATAATGTGGCAAGGGTAAGGTGCATGGACCAAAGCCTACAAAAGAACAAAGTTGAGAAGGTTATAACAGGTTTTCATGATCCACAACAACAGCATGTTTGGAGGCCTCAAAGAGGCTTCCCCGAGCGTGCGGTCGCGATTCTTAGAGCTTGGTTGTTTGAACACTTTCTTCACCCTTATCCTACAGACACTGATAAACACATGTTGGCTACTAAGACAGGTCTTTCAAGAAACCAGGTATCAAATTGGTTTATCAATGCTCGAGTTCGAGTGTGGAAGCCTATGGTTGAGGAAGTACACATGCTTGACAAAAATACAACAACAGGTACGAATGATAACTCCAACCGAACTGAAGGAACTTCCGGCACTGAAGGTGGCTCATGCAACCAACCTAAAATGGATAAGACAGTTAACGGGTTTTTCATGCATTCAATACCTGAAAACCAAATTCAGGATATGGAGTTTGGTTCATCGATAGATAGAAATGCAGATGAAAGTGCATTAAATGAAGCAGAACAATGGAGAGAAGAGAAGCGATCAAAATTGGACTGTGAAATGAGTTCAAGAATGGATGGAACACTGATGGATTTTTTGCCATATAGACATAGTGGACATGATGTTGGAGGATCACTTGGGTCTGTTTCATTGACATTAGGTCTTAGGCATGGTGTTGAAGGTGTTCAACACCAAGAGGTTCAATTTAGACATCATCATCACCTTGGAGGGCAATTTGTAGGATGA 1995 0.384 MQDLVQVRSFRNGYYNHEEPVVVYSSSENPNFFTTLNPLEYQEQLGGSSEESSRLFMMQQHHHHHQLHQQQHYGSYANSLTDFHSPEQKHASDFENWRNNTVQHQVTDRFLNNATNSLPCVYGGDKQLGHVMHHTPTSSTLYQNHSLQDIVKSITSNSSDSHMTSLMHHNNAQEICVVNASELQHQPNQLEFGWKNQIDSNPQSLSLSLSSKAHVSRDCGKPLQDLVVGIMPNSKTTTSYGNVGPLGPFTGYATILKNSRFLKIAQNLLSEVCCPKFVSTCDVSETEDASKESHSCSSSSMFHVTKENSSDWGSRSGFGVSLRPDYQQNKAKLVYMQEEVSRRYKQYQHQMQMVFSSFESVAGLNSATPYITLALKLVSKHFKCLNNSISNQLKLIGEVMQNDSSIATTNNITHFADTDNVARVRCMDQSLQKNKVEKVITGFHDPQQQHVWRPQRGFPERAVAILRAWLFEHFLHPYPTDTDKHMLATKTGLSRNQVSNWFINARVRVWKPMVEEVHMLDKNTTTGTNDNSNRTEGTSGTEGGSCNQPKMDKTVNGFFMHSIPENQIQDMEFGSSIDRNADESALNEAEQWREEKRSKLDCEMSSRMDGTLMDFLPYRHSGHDVGGSLGSVSLTLGLRHGVEGVQHQEVQFRHHHHLGGQFVG* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6423 664 CDD homeodomain 452 513 IPR001356 GO:0003677
Psa5g6423 664 Pfam Associated with HOX 255 390 IPR006563 -
Psa5g6423 664 SMART prehox3 250 391 IPR006563 -
Psa5g6423 664 Gene3D - 455 517 - -
Psa5g6423 664 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 51 642 - -
Psa5g6423 664 SMART HOX_1 452 516 IPR001356 GO:0003677
Psa5g6423 664 ProSiteProfiles 'Homeobox' domain profile. 449 512 IPR001356 GO:0003677
Psa5g6423 664 SUPERFAMILY Homeodomain-like 453 518 IPR009057 -
Psa5g6423 664 MobiDBLite consensus disorder prediction 521 549 - -
Psa5g6423 664 Pfam Homeobox KN domain 469 508 IPR008422 GO:0003677|GO:0006355
Psa5g6423 664 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 51 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6423 Psa-Chr5 544855294 544858296 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6423 202 541 Homeobox Transcription Factor Family AT5G02030 45.961 1.21e-73 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Psa5g6423 POX 5.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6423 - - mtr:MTR_2g095050 724.931