Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6416 ATGCAATTGCTTTTGAGGATAAGGCTGCTTCTACTCATAATGATTCAAATGTTAGTATACCTCAACAAATCAACCGGAAAATTATCTTGTGGAGTAAAAGAAAAGATAGACAGCAACAATGAAATTCCAACACTTACACTATCCGTAAAAGAATCTCAAGAGAAAAAACAAGGAGGAGGAAGAAGAGTCGCGGCCGTAGTTGGTGGTGCTGGTGCTGCTTTAGTCATCATTGTCATTGTGGTGATTATCTATATCTGCTTGAGACGGTATAGACGATTCAAAAGACAAACATCTGATTCTGCTTCTTCCGTACCATCTCAAGCTCTTGAGATGGGAAGAATCAACAGCTCGCAGTATGTTAATGCTTTCTCTCCACATTACATGCAGAACACAAGATTGTTAACAATTTCGGAGCTGGAACAAGCAACGGGAAATTTCAGTCAAAGTAACATTATAGGTGAAGGAAAATTTGGTTTTGTATACAAAGGTTTGCTTGAAGATGGATCTTTTGTGGCTATAAAAAGACGCATGTTTGCTTTGACTCGAGATTTCATCCCAGAGGTCAAGCAGATAGCTCAAATTCATCACATTCATATTGTGAAGCTTATAGGCTATTATGAAGATAGCTATCAACAATTACTTGTGTATGAATATCTCCCTAATGGCAATGTAGGGAATCATCTATATGACAATGAAGGTTTACCTATTGGAAAGTTAGACTTGCAGCGTAGGGTATCCATCGCCTTAGGCGCATCCAAAGGATTGGATCACCTTCATGGTTTGGTCCCTCCTATGCTTCACACAAACTTTAGTACAATAAATGTTCTGTTAGATGAAAACTTTACGGCCAAGGTATCTGATTACGGGTTCTGCAAATTGCAAACAAAAGTTGATCAGGCGGGTTCATCTTCAAATGTTGACTACTTTCATGATCCAGAGTTGAGGTTATCAGAAAACTATTCGGAGCAAAATGATGTATACAGTTTCGGAGTGTTTTTACTAGAGTTGATTAGTGGTTTTGAAGTCCACAACAGAAACATGTCACAACCAGACAAAAATATAATATTTCAGGCGAAATATAGCAGTGTTATGGACAAGTTTATCGACATAACATTGCGAGAGGAAGAAAGAGTTGCTGCTAGACGAATGATGAAGTTGGCTTTACTTTGTGTGGATGTGATTCTTAGAAGACCATCAATGGCACATATTGTGCAAGAGTTGGAAAGGATACAAAGAGATATTGCTCCTTTGTATTCTGAAATCAATGAGGAGATTGGTGTGGTGACTCTTGGGAGTGAGCTCTTCAAATAA 1311 0.3837 MQLLLRIRLLLLIMIQMLVYLNKSTGKLSCGVKEKIDSNNEIPTLTLSVKESQEKKQGGGRRVAAVVGGAGAALVIIVIVVIIYICLRRYRRFKRQTSDSASSVPSQALEMGRINSSQYVNAFSPHYMQNTRLLTISELEQATGNFSQSNIIGEGKFGFVYKGLLEDGSFVAIKRRMFALTRDFIPEVKQIAQIHHIHIVKLIGYYEDSYQQLLVYEYLPNGNVGNHLYDNEGLPIGKLDLQRRVSIALGASKGLDHLHGLVPPMLHTNFSTINVLLDENFTAKVSDYGFCKLQTKVDQAGSSSNVDYFHDPELRLSENYSEQNDVYSFGVFLLELISGFEVHNRNMSQPDKNIIFQAKYSSVMDKFIDITLREEERVAARRMMKLALLCVDVILRRPSMAHIVQELERIQRDIAPLYSEINEEIGVVTLGSELFK* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6416 436 Gene3D Phosphorylase Kinase; domain 1 107 218 - -
Psa5g6416 436 ProSiteProfiles Protein kinase domain profile. 146 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6416 436 ProSitePatterns Protein kinases ATP-binding region signature. 152 174 IPR017441 GO:0005524
Psa5g6416 436 Pfam Protein tyrosine and serine/threonine kinase 149 406 IPR001245 GO:0004672|GO:0006468
Psa5g6416 436 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 30 434 - -
Psa5g6416 436 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 30 434 - -
Psa5g6416 436 Gene3D Transferase(Phosphotransferase) domain 1 220 419 - -
Psa5g6416 436 SUPERFAMILY Protein kinase-like (PK-like) 125 417 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6416 Psa-Chr5 543601767 543604765 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6416 61 410 Receptor kinase-like Gene Family AT1G79620 33.780 2.04e-51 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Psa5g6416 PK_Tyr_Ser-Thr 2.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6416 - - aprc:113855951 543.502