Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6413 ATGGGTAAAGATGTTGAGGTTCAAGAACAAGGTGCTGAATTCTCAGCTAAGGATTACCAAGATCCACCACCAGCACCACTTTTTGATTCAGCTGAGTTTAAAAAATGGTCTCTGTACAGAGCTGTTATAGCAGAGTTTGTAGCAACTCTTCTTTTTCTTTACATCACTGTTTTGACCATTATTGGTTACAAAAGACAATCTGATACCGATATTAAGGGTAACACTGAGTGTGATGGTGTTGGTCTTTTGGGTATTGCTTGGGCTTTTGGTGGTATGATCTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGAGGACACATAAATCCGGCAGTGACATTTGGATTATTTGTGGGACGCAAGGTGTCTTTAATAAGGGCATTACTATACATAATAGCACAATGTTTGGGTGCAATTTGTGGTGCTGGACTTGCTAAGGGGTTCCAAAGTTCATACTACAACAGGTATGGTGGAGGAGCTAACACTGTTTCTGATGGTTACAGTAAAGGCACTGCTTTGGGTGCTGAGATTATTGGTACCTTTGTGCTAGTCTACACTGTTTTCTCTGCTACTGATCCTAAAAGAAGTGCTAGGGATTCTCATGTTCCTGTATTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCAACAATCCCCGTCACCGGAACCGGTATTAACCCTGCCAGAAGTTTCGGACCCGCAGTTATCTTCAACAACGACAAAGCTTGGGATGACCAGTGGATTTATTGGGTTGGACCATTTATTGGTGCTGCAGTGGCTGCAATCTACCACCAATACATTCTAAGAGGATCAGCAATTAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA 864 0.4306 MGKDVEVQEQGAEFSAKDYQDPPPAPLFDSAEFKKWSLYRAVIAEFVATLLFLYITVLTIIGYKRQSDTDIKGNTECDGVGLLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRALLYIIAQCLGAICGAGLAKGFQSSYYNRYGGGANTVSDGYSKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAAIYHQYILRGSAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6413 287 TIGRFAM MIP: MIP family channel proteins 44 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Psa5g6413 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Psa5g6413 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Psa5g6413 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Psa5g6413 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Psa5g6413 287 SUPERFAMILY Aquaporin-like 32 272 IPR023271 -
Psa5g6413 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6413 Psa-Chr5 543477849 543480404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6413 1 287 Major Intrinsic Protein MIP AT3G53420 80.836 2.16e-170 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6413 K09872 - gmx:732581 532.717