Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6404 ATGTCATTAGGTTCAAAGACACGCATTTCAAGCAAAATTGTAATAATCATTTTAGTAATGTCTATTACATGCACAACTGTTGCATTTCTTGCCTTATTTGTATGTTATGTTCGTCGAAGGAAGAGGCATCATCCTATTCAATCACCAATGAACTCATCATCAGATAAGGAAACAGGTTATATTAATACTAGCAACTTCATTAGTCGGAAAACTTCTTTTGTGCCAGAAACAAAAGGCGTTATGAATTCTCCTATTAGTCATATTACAAAATGCTTTCAAAAAGCATCTATTTTGCTTGGGAGTCAAAGAGAAACATTTCATGGAAATATTATTCAATTCTCATTTGCTGAACTGGAAAATGCCACTGAAAACTTTTCAGCTTCGAATATTATTGGATTAGGTGGAAGTAGTTATGTATACCATGGTCGACTGAAAAATGGCAGTAATGTGGCAGTCAAGCGACTTAAAGTTCAAGTAGGACCTGAAGCAGACACCGAGTTTTTCACAGAGATTGAACTATTGTCTAGACTTCATCATTGTCATCTGGTGCCATTGATTGGATACTGCTCAGAGTTAAAAGGAAAAAATGTTCAGAGATTACTAGTGTTTGACTACATGAGTAACGGAAATTTGAGGGACCGTTTAGATGGAAATTTCGGAAAAAATATGGATTGGTCTACTCGTGTTACAATTGCATTAGGGGCTGCAAGGGGCTTGGAGTATCTTCATGAGGCAGCTGCTCCAAGAATTCTTCACAGAGATGTCAAATCAACAAACATTCTTCTTGATAAAAATTTGCAAGCAAAAATAACTGATCTCGGTCTGGCTAAAGACTTGAGATCTGATGACCTCCGTAGTTGTTCGGATTCTTCAGAAAGAATGAAAGGGACATTTGGCTATTTTGCACCTGAGTATGCAATTGTTGGGAGAGCCTCTATTGAGTCTGATGTCTTCAGTTTTGGCGTAGTTCTTCTTGAGCTTATCACTGGTCGCCAACCAATCCTTAGATCTGCAGGCAAAGAAGAAAGCCTTGTCGTATGGGCTACTCCTCGCTTACGGGATAGTAGGCGAGTAATGACAGAGTTGGCCGATCCACAATTGAAAGGAAACTTCCCAGAAGATGAAGTGCATATAATGGCAAACCTAGCAAAGGAATGCTTACTGTTGGATCCTGATAAAAGACCAACTATGAGTGAAGTTGTTCTAATTCTATCAAGTATTACCCGAACCAGATCTAGAAGAAGAAGATACATTCAATTGTGTCTTTTTCAGGAACCAGAGGATGCAGAGAAGCCAAGACAAGCTTCATGGAGAAGATTTCCACCTCATAATTCAATGCCACGTGGTACTGACTACAATCTTCGTGTTGAAAACGAAGATAAAAATGTAGATACAATTTCAACCGAGTATATGAAGAGTTTGATCCTCTCGACTTCAAAAGGTGAGAGTTGGCACGCATCAGAAGAAGACATGGTAGACCTATCAGAGCCTCGGTTAGAGTCATTTTGCATGACAAACATCAATTTCCCTTGA 1533 0.3881 MSLGSKTRISSKIVIIILVMSITCTTVAFLALFVCYVRRRKRHHPIQSPMNSSSDKETGYINTSNFISRKTSFVPETKGVMNSPISHITKCFQKASILLGSQRETFHGNIIQFSFAELENATENFSASNIIGLGGSSYVYHGRLKNGSNVAVKRLKVQVGPEADTEFFTEIELLSRLHHCHLVPLIGYCSELKGKNVQRLLVFDYMSNGNLRDRLDGNFGKNMDWSTRVTIALGAARGLEYLHEAAAPRILHRDVKSTNILLDKNLQAKITDLGLAKDLRSDDLRSCSDSSERMKGTFGYFAPEYAIVGRASIESDVFSFGVVLLELITGRQPILRSAGKEESLVVWATPRLRDSRRVMTELADPQLKGNFPEDEVHIMANLAKECLLLDPDKRPTMSEVVLILSSITRTRSRRRRYIQLCLFQEPEDAEKPRQASWRRFPPHNSMPRGTDYNLRVENEDKNVDTISTEYMKSLILSTSKGESWHASEEDMVDLSEPRLESFCMTNINFP* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6404 510 SUPERFAMILY Protein kinase-like (PK-like) 106 404 IPR011009 -
Psa5g6404 510 Gene3D Transferase(Phosphotransferase) domain 1 206 422 - -
Psa5g6404 510 Gene3D Phosphorylase Kinase; domain 1 87 205 - -
Psa5g6404 510 ProSitePatterns Protein kinases ATP-binding region signature. 131 153 IPR017441 GO:0005524
Psa5g6404 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Psa5g6404 510 SMART serkin_6 125 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6404 510 ProSiteProfiles Protein kinase domain profile. 125 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa5g6404 510 Pfam Protein tyrosine and serine/threonine kinase 128 402 IPR001245 GO:0004672|GO:0006468
Psa5g6404 510 PANTHER OS01G0253100 PROTEIN 2 504 IPR045271 GO:0004714|GO:0006468
Psa5g6404 510 PANTHER RECEPTOR-LIKE SERINE/THREONINE-KINASE NCRK PROTEIN 2 504 - -
Psa5g6404 510 CDD STKc_IRAK 131 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6404 Psa-Chr5 542610381 542614069 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6404 6 507 Receptor kinase-like Gene Family AT2G28250 52.372 6.84e-165 477
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XVI Psa5g6404 PK_Tyr_Ser-Thr 6.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6404 - - lja:Lj3g3v1089410.1 748.814