Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6393 ATGTCGTTTGATGCCACCAAAGAAGAAAATATAGCAAACATAGAGGCGAAGATTGCAGATTTGAAGCAAGAGTTATCGTTGATGAAGGTTACTTTCTCAATTTCTATCGCAGAGGTTCAACAAACGGCGAGGGATAATCAAAGAGTGTTGATGCAGATGATGGAGAAGGTTCTGGGAAAGAAGGTGAGTGAAGTTGAAGATGGTGTCTCGTCGGCTGTAAACGGTGTTGTTACCACAAAATCACCGGTCACATCATTGAAGAAGGTGGAGCTACTAGAGAGGTATGGAGGTTTGGGGGAAGGAGACGTTTATGAGCAACTTACAGAGATTCGTCAAAAGGGTATAGTGGAAGAATATATACAAGAATTTGAGTGTCTAACTGCTCAGATTCCAAGGTTGTCTGACAAACAGTACATTGGGTATTTTTTGCACGAATTGAAGGATGAAATCAGAGGTAGGGTTCAGAGTTTTGTGGCGATGGGACCAATTACGAGGAGTAAATTACTTCACGTCACCATAGTAGTGGAAAGGGAGATAAGGGGTGGGTCAGAAGAACTCAAGCGTGACAAAGTTCAAACATTCAAACTCAGAGCAACAATCAATGGAGTACCGGTGGTGGTGTTATTTGACAATGGGGTTACGCATAATCTCATTGCAAAGTCCATGGTTCAGAAGTTAGGGTGGCAAGTAGAGACCACTCCAAATTTTAGAGTCAAGTTAGGTGATGGGTTTCAAACCATTACCAGAGGAAAATGTATGCAAGTCTTATTCAAAACTGGGGAAATCACTTGTGAAATCGAGGCTTATCTATTTGATTTAGATGGGGTGCATGTAGTTATGGGTGTGGAATGGTTGAAATCTTTGGGAGATATGATAATCAATTGGAAGAAACAAACAATGAAGTTTTGGCATGAGGGGAAGTGGGTAATCTTGAGAGGGATAGAAGGTACACTTGAAGCAATCCCAGCATTGCAAAGCATCGTAGGGAAGGCTAGCAAAGTATTGAAGTTATTTGATGATGTGTTCCAAGAACCTAATGGTCTTTCTCCATGTCGCACAAAGGACCATGCTATCAATTTAATGTTAGGACAAGGCGTAGTCAATGTCAGACCGTACAGCAAGGGTCACTCATCATATCCAGCCTGTCATGAGGTTGCAGATTTTGGTTTGGTTAAAAATGCACCTGATGGGAAATATTCCGTTGAAACAAGGCTGGCAGGCGCATTTGGATATTTGGCACTCTGTGGAAGAAAGCAAAGCAAAGTGAAAACAACGTATTGGCTTAAACGCACCTTTTCCAAGAGTTTCACAAATCCAAACACTTCAACAGAATCCAATTCCACACAACAATCACAAGAGCATAAACATCATGAGATAAGAGACAAACTCATGGCATCGCATACAGAGTTAGCTGAAGAAGGAGCTATTCAAATTGTAATAATTAAAAAGACCGGTGACAAAATATTATCGCAACCGCTCGCAGACATAGGTGGGAAGGGATTGTTCACAAAAGGGATAGATGAAGCACTCATAAATGGGGACATTGCCATTGCTGTTCATTCAATGAAAGATGTTCCTACATACTTACCAGAGGAAACTATTTTACCGTGTAACCTTCCACGAGAGGATGTTAGAGAGGCATTTATATCATTGAGTGCGGCTTCACTAGCTGATCTACCGGCTGGAAGTGTTATTGGTGGTTCTAGCTTTGAAGTGGTCATAGTTAATCGAACAATTGATCCTGCCCTGGACGAGCTGGTGCAAATTGCACATTGTATAGCATTGGACTGTCCTGTCACTGAGATCAGTATTTTGGTGCAAAGGCTTGCCGAACTTGTTACTAGCCATATGGGCGGCCCTGTAAAGGATGCTAATATTATATTAGCAAAATGGACAGAAAGAAGTACAGAATTAAGAACATCTCTTCACACAAGTGTATTACCTCTTGGGTCCTTAGATATTGGGCTCTCTAGGCATCGCGCTTTACTTTTCAAGATATTAGCAGACAACATTAAGATGCCTTGTAGACTTGTTAAAGGCAGTCATTACACTGGTGTTGAGGATGATGCTGTCAACATTATAAAATTAGATGATGAAAGGGAGTTTTTAGTTGATCTCATGACTGCTCCTGGAACACTCATCCCAGCTGATATTTTAAATGCGAAGGATAACGCCTTTAAGTCTTACAACCCCACCGATTCTCAGAACCTTTTTGCAGATCTGAACCCATTCTTGATATAA 2241 0.4123 MSFDATKEENIANIEAKIADLKQELSLMKVTFSISIAEVQQTARDNQRVLMQMMEKVLGKKVSEVEDGVSSAVNGVVTTKSPVTSLKKVELLERYGGLGEGDVYEQLTEIRQKGIVEEYIQEFECLTAQIPRLSDKQYIGYFLHELKDEIRGRVQSFVAMGPITRSKLLHVTIVVEREIRGGSEELKRDKVQTFKLRATINGVPVVVLFDNGVTHNLIAKSMVQKLGWQVETTPNFRVKLGDGFQTITRGKCMQVLFKTGEITCEIEAYLFDLDGVHVVMGVEWLKSLGDMIINWKKQTMKFWHEGKWVILRGIEGTLEAIPALQSIVGKASKVLKLFDDVFQEPNGLSPCRTKDHAINLMLGQGVVNVRPYSKGHSSYPACHEVADFGLVKNAPDGKYSVETRLAGAFGYLALCGRKQSKVKTTYWLKRTFSKSFTNPNTSTESNSTQQSQEHKHHEIRDKLMASHTELAEEGAIQIVIIKKTGDKILSQPLADIGGKGLFTKGIDEALINGDIAIAVHSMKDVPTYLPEETILPCNLPREDVREAFISLSAASLADLPAGSVIGGSSFEVVIVNRTIDPALDELVQIAHCIALDCPVTEISILVQRLAELVTSHMGGPVKDANIILAKWTERSTELRTSLHTSVLPLGSLDIGLSRHRALLFKILADNIKMPCRLVKGSHYTGVEDDAVNIIKLDDEREFLVDLMTAPGTLIPADILNAKDNAFKSYNPTDSQNLFADLNPFLI* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6393 746 Coils Coil 4 31 - -
Psa5g6393 746 Pfam Ethylene-responsive protein kinase Le-CTR1 555 714 - -
Psa5g6393 746 PRINTS Porphobilinogen deaminase signature 485 505 IPR000860 GO:0004418|GO:0033014
Psa5g6393 746 PRINTS Porphobilinogen deaminase signature 516 535 IPR000860 GO:0004418|GO:0033014
Psa5g6393 746 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 555 734 - -
Psa5g6393 746 Gene3D Acid Proteases 182 307 IPR021109 -
Psa5g6393 746 Pfam Porphobilinogen deaminase, dipyromethane cofactor binding domain 458 570 IPR022417 GO:0004418|GO:0033014
Psa5g6393 746 PANTHER SERINE-THREONINE PROTEIN KINASE 555 734 - -
Psa5g6393 746 SUPERFAMILY Periplasmic binding protein-like II 462 570 - -
Psa5g6393 746 MobiDBLite consensus disorder prediction 438 458 - -
Psa5g6393 746 Gene3D - 453 554 - -
Psa5g6393 746 Pfam Aspartyl protease 197 283 - -
Psa5g6393 746 CDD retropepsin_like 196 286 - -
Psa5g6393 746 SUPERFAMILY Acid proteases 192 291 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6393 Psa-Chr5 542197701 542207691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6393 555 730 MAP Kinase Kinase Kinase AT1G08720 61.364 1.52e-65 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6393 - - aprc:113870732 301.982