Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6389 ATGCATTTCTTTCATATATATTTCACAATCTTGTGCTCTTTTGTTTCTCACCACAATATGAGTTCTTCTCATCAACTTTCTTCTTGCAAAAGAACTCTTTCTCTTCCACTTCACAAGGAGAATCCTCTCTTGGAAATACCCTACAAAACATCACAAGAATCATCTTGTTCATCTTCATCGTCATTCTATTCGAACGAATTTGTTGGAATTAAGATGCCATTGACACCGAGTCCAACACCGTCTCACAAGAAGGTTAATTTCCTTGTTACATCACGTTCTGTGGATGCTCCAATTGTTGATAGTGATAACAACAATCTAGGGATTTTAACCGGAGGGAAGAAGTCATCAGGTGGTGGTAGAAGTATTTTACCGAAATTGAACTTTCGGTATAATAGGACATCATCATCTGATATTGAAAAGGGTATAACTTTGGCTCCGGAAAGTCCTTATGAGAAGCCTTCAATCTCTGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGTTACCGGTTGAAGAAATTGAGCGTGTTAACACAGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCGATAGCTCGCACTCGTTCAGAGCCTGTAGATAGCCAAGAAAAAACCATAAGGAAAATGGATAAGTTTTTCCGGATTATTCCTTCCACCCCAGGTGTAAAGGAAGTGAAAGAATGGTTAAAAACTTCCGCAGAAAACGATACTGAAAATGACGGTGATAACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGAATTTGTCTGATTGAGCTATGTGAAGGAGGCGAGACATTGAAGATGGAATGCAGTTGCAAAGGCGAACTTGCATTGGCTCACCAAGAATGTGCTATCAAGTGGTTCAGTATTCGGGGTAACAAGACATGTGATGTGTGCAAGGAAGAAGTTCAGAATCTTCCGGTCACTCTCTTACGGATCCAAAATGTCCAAACTCAGACTACCGCAGCAAGGTCTCACCAGGATGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTCTGGTCGGAAAAATGGGAACCAAAGCAATTTTCATTTCTCTTCCGTTTTCCTGTGTACTCGGTCTAGTCTCCGCCATGACATCAACAACCATGGTGAGGAACAGGTTCATCTGGCTTTACGCATCTGCCCAATTCACGTTGGTTGTTATCTTCGCACATATATTTTACCCCTTGTTTTGTAACCTGCAGGTTGGTAAGCAAGCAGTTTTAGCAATCCTTCTTGCATCATTTGCTGGATTTGGTGTAATGATGAGCGGAAGTTCAATAGTTTCCGAGTTACTCAAATGGAGAAGAAGATGGCAAGCTTACTCGGAGCAGCGCTCTCAAGTGATGACGCAAGAAGGACTATATTCTCAAAGTGTAATTACCCCACAACCAAGCCTTCCCACCTACAACCAAACTACAGTGCAACTTTGA 1527 0.4191 MHFFHIYFTILCSFVSHHNMSSSHQLSSCKRTLSLPLHKENPLLEIPYKTSQESSCSSSSSFYSNEFVGIKMPLTPSPTPSHKKVNFLVTSRSVDAPIVDSDNNNLGILTGGKKSSGGGRSILPKLNFRYNRTSSSDIEKGITLAPESPYEKPSISGSVSLSKLFAPKIYRTSSLPVEEIERVNTEFAFGGCLGASPYRSQGSIARTRSEPVDSQEKTIRKMDKFFRIIPSTPGVKEVKEWLKTSAENDTENDGDNGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKEEVQNLPVTLLRIQNVQTQTTAARSHQDDDFRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFISLPFSCVLGLVSAMTSTTMVRNRFIWLYASAQFTLVVIFAHIFYPLFCNLQVGKQAVLAILLASFAGFGVMMSGSSIVSELLKWRRRWQAYSEQRSQVMTQEGLYSQSVITPQPSLPTYNQTTVQL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6389 508 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 322 IPR013083 -
Psa5g6389 508 SMART ringv_2 266 315 IPR011016 GO:0008270
Psa5g6389 508 Pfam RING-variant domain 267 314 IPR011016 GO:0008270
Psa5g6389 508 ProSiteProfiles Zinc finger RING-CH-type profile. 259 321 IPR011016 GO:0008270
Psa5g6389 508 SUPERFAMILY RING/U-box 263 318 - -
Psa5g6389 508 CDD RING_CH-C4HC3_MARCH 267 315 - -
Psa5g6389 508 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 34 482 - -
Psa5g6389 508 PANTHER OS02G0165000 PROTEIN 34 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6389 Psa-Chr5 542127036 542130984 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6389 255 321 C3H Transcription Factor Family AT2G37950 41.176 1.28e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6389 - - cam:101488558 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6389 5 542127036 542130984 Psa5g6389 5 542127036 542130984 ECH
Psa5g6389 5 542127036 542130984 Psa7g5149 7 450497795 450501319 PCT