Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6377 ATGATGTCTGATGAAGCTGTTTCTGTTCCTTCCAACCTCATCAGAAGCACCTCAAACTCAAACTCAAACCCTAATCCTCCTAACCCTAATAAGAGAAAAAGAAGTCTACCAGGAACACCAGATCCGGCTTCAGAAGTGATTGCTCTATCACCAAAGTCACTGATGACGACAAACCGTTTCATCTGCGAAGTATGCAACAAGGGTTTCAAGAGAGACCAAAACCTGCAGCTACATCTGCGAGGCCACAATCTTCCATGGAAGCTTAAGCAGAGAAACCATCAGGAGGTTGTAAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGCTGTGTGCACCATGACCCTAGTAGAGCTTTAGGTGACTTAACAGGGATAAAAAAGCACTTTAGTAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGATAAGTGTTCTAAGAAATATGCAGTTCAATCTGATTGGAAGGCTCATAGTAAGATTTGTGGTACTAGAGAGTACAGATGTGACTGTGGCACATTATTCTCCAGGAAGGACAGTTTCTTAACGCATAGAGCCTTTTGTGAATCCTTGGTGGAAAGAAGTGCAAGAATAGGTTCAGCTCCAGCAGTTTTATCCAACTTTGGAAACAATCTTTTGATCAACACTCAAGCTCAAGCTCAAGCACCAAGAGTTCCTCATGGTTTATTTGGGCTTAATCAGGAATTCGGTGGACCAATCCCAGAACAATTCATGGGAAATTTTCTCAATAATAATCCTCATCATCATCAGATTAACATCCCTCATCATAATTATCTTCCAAGCAACACCACTACTACAACTAGTGTATTCTCATCATCAGAAGCAAACTCTGATTTAGAATTACTTCAGACAAACATGAACACATTCGGTTCAATACCAAATGGACAGTGGATGAATTACCGTTACACCGATCAACAAGAAGTATCCATGCCTATGCTTACCCAAGGAGTACTCAAGCTAGAACAAGAAGACAACAACAAAATGAATGATTTGTCTCATTTGTATTATCAGAACCAAGTACAAGGAGGTCCAAGTCACGTGTCAATGGAATCTCAATCCACAACTAGAAACGTGAACAATGGTTATAATTCTGCACCTCCCAACATTGTTGAAATTAAGAAACTGTTCAAGCAAGGAAACCATGCAGGAAATATGAATGAAGATCAACTAAGCTTAACTAGAGATTTCCTTGGAGTTGGAGATGATTCATTGAAGAAACCCTTGTTGCAACAAGAGGTCCCTAGGTTCAATCCAATAGGACCTGTCATGAACATGCAAAATGATCAGTTTGGTGGACACTATTGA 1317 0.4062 MMSDEAVSVPSNLIRSTSNSNSNPNPPNPNKRKRSLPGTPDPASEVIALSPKSLMTTNRFICEVCNKGFKRDQNLQLHLRGHNLPWKLKQRNHQEVVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYRCDCGTLFSRKDSFLTHRAFCESLVERSARIGSAPAVLSNFGNNLLINTQAQAQAPRVPHGLFGLNQEFGGPIPEQFMGNFLNNNPHHHQINIPHHNYLPSNTTTTTSVFSSSEANSDLELLQTNMNTFGSIPNGQWMNYRYTDQQEVSMPMLTQGVLKLEQEDNNKMNDLSHLYYQNQVQGGPSHVSMESQSTTRNVNNGYNSAPPNIVEIKKLFKQGNHAGNMNEDQLSLTRDFLGVGDDSLKKPLLQQEVPRFNPIGPVMNMQNDQFGGHY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6377 438 MobiDBLite consensus disorder prediction 1 41 - -
Psa5g6377 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Psa5g6377 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 403 - -
Psa5g6377 438 Gene3D Classic Zinc Finger 115 194 - -
Psa5g6377 438 Pfam Zinc-finger double-stranded RNA-binding 60 82 IPR022755 -
Psa5g6377 438 Gene3D Classic Zinc Finger 39 113 - -
Psa5g6377 438 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Psa5g6377 438 SUPERFAMILY beta-beta-alpha zinc fingers 59 157 IPR036236 -
Psa5g6377 438 MobiDBLite consensus disorder prediction 1 29 - -
Psa5g6377 438 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 17 403 - -
Psa5g6377 438 SMART c2h2final6 137 157 IPR013087 -
Psa5g6377 438 SMART c2h2final6 102 132 IPR013087 -
Psa5g6377 438 SMART c2h2final6 60 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6377 Psa-Chr5 541698001 541701083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6377 31 204 IDZ Gene Family AT3G45260 84.181 3.36e-109 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g6377 zf-C2H2_jaz 7.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6377 K25870 - gmx:100811687 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6377 5 541698001 541701083 Psa5g6377 5 541698001 541701083 ECH
Psa5g6377 5 541698001 541701083 Psa7g5132 7 449531812 449534404 PCT