Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6376 ATGGAGGGAGAACAAAAGGGATCCAAATCCGATTACAATTTTCCGCCCGGTTTTAGATTCCATCCTTCTGATGAAGAACTCATAGTTCATTACCTGCAAAACAAAATCAAATCGCGTCCGCTTCCAGCTTCTATTATAGCTGAGATTGATCTCTATAAATATAATCCATGGGAGTTACCAAACAAGTCTTTGTTTGGAGAGGAAGAATGGTATTTCTTTAGCCCGAGAGACCGAAAGTACCCGAACGGATTAAGGCCTAACAGAACAGCGGCTTCCGGATACTGGAAGGCAACTGGAACTGATAAGCCGATTATTTCTTCTTGCGGATCGAAGCATATAGGAGTCAAGAAAGCTCTTGTGTTTTATTCTGGTAGACCTCCTAAGGGTGGTAAGACAGATTGGATCATGAATGAGTATAGGTTGGTTGATACGACCACAAAATCATTCAGACTAAAAGGTTCCATGCGGTTGGATGACTGGGTATTATGTCGGGTTCGACATAGAGGCTACTCGTTGAAGAATTTATCTGAAAATCAAGAGAATCATTGTGAACCAAGCATACCAGTAAACCTACAGAAGGGCGAAGAACACCGAACAAATACAAGCGTTCAAGCTGACATGATCACAGATTATCAATACAAAGATTATCAGATCATTGCGTCTATTCTTGTTGGTGGAGTCACACCTCCAACAGAGAACATGTCAAATTTGAGCTTTAAGGGAATAAGAAGCGGCGATCTAAATACAGTTTATGAAGAAAGTTTCGATAAAATGAATTCTCAAACTACAATCCCTTCTTTAGAATGTTACTTCAATCCACTGAAAAGAAAATTCAATGAGGATGATGAACAGTTGGAAAATCTCATTTCTTTTAATAGCAAATTCAACACTCAGAACAAAATAGAGAAATCTCCAAGCATCGATTTTCAAGAACTAAACAAATTAACCTTTGCAGAAAGATATCAGCAGTGA 972 0.3879 MEGEQKGSKSDYNFPPGFRFHPSDEELIVHYLQNKIKSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRTAASGYWKATGTDKPIISSCGSKHIGVKKALVFYSGRPPKGGKTDWIMNEYRLVDTTTKSFRLKGSMRLDDWVLCRVRHRGYSLKNLSENQENHCEPSIPVNLQKGEEHRTNTSVQADMITDYQYKDYQIIASILVGGVTPPTENMSNLSFKGIRSGDLNTVYEESFDKMNSQTTIPSLECYFNPLKRKFNEDDEQLENLISFNSKFNTQNKIEKSPSIDFQELNKLTFAERYQQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6376 323 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
Psa5g6376 323 PANTHER NAC TRANSCRIPTION FACTOR 56 10 308 - -
Psa5g6376 323 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 10 308 - -
Psa5g6376 323 ProSiteProfiles NAC domain profile. 14 168 IPR003441 GO:0003677|GO:0006355
Psa5g6376 323 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Psa5g6376 323 Gene3D NAC domain 23 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6376 Psa-Chr5 541653813 541654979 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6376 10 238 NAC Transcription Factor Family AT1G69490 53.219 6.03e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g6376 NAM 6.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6376 - - gmx:100817193 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6376 5 541653813 541654979 Psa5g6376 5 541653813 541654979 ECH