Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6368 ATGGAGAATGACACAATTAGAAACATTCCAATTTCCTCTCCCTCTAAATTTTCTCACTCTTCTAGTTCTTCACTTCCACCTCTTGCAACTCAAACTGTGATGAGTCCTTGTGCTGCTTGCAAGATTTTGAGAAGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTTCCTCCCACAGAACCTGCCAAATTTACCACTGCTCATCGTGTGTTTGGTGCCAGCAACATCATCAAGTTCTTGCAGGAACTTCCGGAATCTCAACGAGCTGATGCAGTGAGCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGATCCTGTGTATGGATGTGCAGGCGCAATTTGTCACCTCCAAAATCAAGTGAATGAGCTTCAAGCACAATTAGCTAAGTCACAAGTTGAACTTATGAACATGCAATTGCAACAATCCAATCTATTGGCTATGATTTGCATGGAAATGAAAGAAACTCCACAACAATCAATGGACAATTTCATTTCAAGTCCTACTTATAGTAGTGATTATCAAAACAATCTCAACTTCTTTGAGGACAACACTAGCCCAAATTTGTGGGAGCCTCTTTGGACATGA 591 0.4078 MENDTIRNIPISSPSKFSHSSSSSLPPLATQTVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQNQVNELQAQLAKSQVELMNMQLQQSNLLAMICMEMKETPQQSMDNFISSPTYSSDYQNNLNFFEDNTSPNLWEPLWT* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6368 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 18 193 - -
Psa5g6368 196 ProSiteProfiles LOB domain profile. 35 136 IPR004883 -
Psa5g6368 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 18 193 - -
Psa5g6368 196 Coils Coil 122 142 - -
Psa5g6368 196 Pfam Lateral organ boundaries (LOB) domain 36 132 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6368 Psa-Chr5 541216450 541219962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6368 32 196 AS2 family AT2G28500 66.486 3.01e-81 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa5g6368 LOB 1.8e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6368 - - gmx:100819336 290.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6368 5 541216450 541219962 Psa5g6368 5 541216450 541219962 ECH
Psa5g6368 5 541216450 541219962 Psa7g5109 7 448432554 448434188 ECH
Psa5g6368 5 541216450 541219962 Psa7g5109 7 448432554 448434188 PCT