Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6364 ATGTTAGATCTTAATTTGAATGCTGATTTGACTCAGAATGATGATAACTCGGTCATGCTACTGGAAAAAATTCCAGAAGCTTCTTCAGGAACTTCGAATTCCTCAATCGTGAATGCGGAGGGGTCGAGTAATATCACCGGAGACGAAGACTCGTGTTCAACACGCGCCGGGGATGTTTTCACCTTCAAATTCGGTATACTTAAGGTGGAAAAAGGAAACGACGCTGTTGCAACGAAAGAGCTGTTTCCGGTGAGTACAGGGAACTGGCCGCAGGGGGAGACTTCGACGATGGTGATTCCGGCGAGGAAGAGCGTGATGGATCTTTCACTTGATCGTCATCTTGGAGGTGAAAATGGAGTTGCTCAGGTTCCGCAACGGCCTCAGGTGAAGAAGAGTAGGAGAGGACCGAGGTCTCGAAGCTCTCAGTACAGAGGAGTCACGTTCTACAGAAGAACTGGAAGATGGGAATCGCATATCTGGGATTGTGGGAAGCAAGTTTATTTGGGTGGATTTGACACTGCTCATGCTGCTGCTAGAGCTTATGATCGAGCTGCTATAAAGTTCAGGGGACTTGACGCTGACATTAATTTCAATCTAGTTGAGTATGAAGAAGATATGAATCAGATGAAGAATCTTTCAAAGGAGGAATTTGTGCACATACTACGTCGCCACAGTAATGGTTTTTCAAGGGGGAGTTCAAAATACAGAGGAGTAACACTTCACAAATGTGGTCGTTGGGAAGCTCGAATGGGACAACTCCTTGGAAAAAAGTATGTATATCTTGGGCTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCAGCTATCAAATGTAATGGAAGAGAGGCTGTGACAAACTTTGAGCCAAGTACATATGAACGTGAGATCAAACCTGAAGCTATCAATGAAGGTGGCAGTCACAATCTTGACCTCAATTTAGGCATAGCAACTCCAGGACATGAACCCAGAGAAAACCGAGGGTATCGTCAGTTTCAGACCGCCCCTTACAACCTGCATTCTGGAAGGAATTTGAAGATGGAGACTAATGCTAATTCAGTTATTAGTGACCCGTCTATGAAAAAGCTGGTTGTAACTGAACAGCGTCCTTCCATGTGGAATGCCACGTATTCTAGTTTCTTTCCCAATGAGGAAAGAGCAGAGAGAATTGGCATTGATCCTTCAAAAGGACCTCCCTACTGGGCATGGCAAGCACATGGCCAGGGCACTGCTTCCCCAGTACCACAATTCTCTACTGCAGCATCATCAGGATTCTCTATTTCAGCTACCTTTCCGTCAAATTCCATCTTTCAAACACAACCTATGAACTCAATCCCACTCCGTTTCACTCCATCCATCGCATCTGGTAGCAATGCATCTCAATACTATTATCAGGTGAAGTCCTCCCAGGCACCACCGTAG 1428 0.4559 MLDLNLNADLTQNDDNSVMLLEKIPEASSGTSNSSIVNAEGSSNITGDEDSCSTRAGDVFTFKFGILKVEKGNDAVATKELFPVSTGNWPQGETSTMVIPARKSVMDLSLDRHLGGENGVAQVPQRPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVEYEEDMNQMKNLSKEEFVHILRRHSNGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKYVYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSTYEREIKPEAINEGGSHNLDLNLGIATPGHEPRENRGYRQFQTAPYNLHSGRNLKMETNANSVISDPSMKKLVVTEQRPSMWNATYSSFFPNEERAERIGIDPSKGPPYWAWQAHGQGTASPVPQFSTAASSGFSISATFPSNSIFQTQPMNSIPLRFTPSIASGSNASQYYYQVKSSQAPP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6364 475 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 447 - -
Psa5g6364 475 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 SUPERFAMILY DNA-binding domain 141 198 IPR016177 GO:0003677
Psa5g6364 475 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 MobiDBLite consensus disorder prediction 116 143 - -
Psa5g6364 475 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 Pfam AP2 domain 233 283 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 447 - -
Psa5g6364 475 SUPERFAMILY DNA-binding domain 233 292 IPR016177 GO:0003677
Psa5g6364 475 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Psa5g6364 475 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Psa5g6364 475 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6364 Psa-Chr5 540708702 540713035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6364 124 349 AP2-EREBP Transcription Factor Family AT4G36920 70.742 3.44e-94 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Psa5g6364 AP2 1.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6364 K09284 - gmx:100777102 719.539