Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6349 ATGAAACCCCTCCCCAGAACTCGACCGTCTCCGTCCACCGGAGCCGAAGACGGCTGGTCCGAGGAGGCCACATTCACACTCATCGACGCCTGGGGCAAACTTTACAAGACGGTTAACCCTAAAAACTTCCGTCAGTATCACTGGAAGGAGGTTGCAAAAGCCGTCAACGACAGTCACGGCTTCGTCAGAAAAGCACGCCGCACTTACGATCAGTGCAAAAGCCGCATCAACGCGCTCAAGAAGAAGTACGCTACCGAGAGAGCTAGGATTTCTGATTCCAGCGATTACGACGACGCATGGCCGTTTTTCGACAAGATCAATTCCATCATTGGGGATGTTTTTCCGGCGAAGAAGCTATCACCATCGCCATCGCCGCCGTTTGTCACTCCCGTTAAGGCTTCGGCATGGGCGCTCGCTCCGGTTGGTCGTCGATCTCGCACACGACCTGCGCCGGCGATAACATCGGCTTCGGAGAGCTTGGATGAATCGCGTTTTAACCGGAATTTAGCTGCCTTTGCTGCAGCGGCAGCAGCTGCAGCTGCGGAAGAAGAGATTGATGAATCTAATTTCGATAATTCAGATTCAGATGAGTGGGAGTTGAGCAATGAGAGCAAGAAGAGGAAGAAGGGAAGAAATGCTATGGAATTAGGACACAGAGAGGTTGCAAGTGCTGCAGAGAAGTTTAGTGAGATACATGGGAGAGTGGACGCATCAAAGCAGAGAAAAAATGTGGCTTTGGAGGAACAGAACATGCAATTTTCAAAGGATTCTCAAAGGATGCAGCTTCGTAAAACCAATCACTCAAAACACATGGATGATCTCTCAGCTCATTCTCAAAGTGGGTTAGATACTCAGTCTACCAACAGAAAGCGTAAACGTGGTCCCACACAAATGAAAAAGTTAGCAGTTATTGATGGACAAAGGATACCGATTGAATTTGATCAATTAACTGGTAAACCGTCAGGGGAAAACAAGACAAAATTCAAGAGTTATTTGGGTTTCCTTAGTCGAAGCAAAATCAGTATTTTGCCGAATGAATGGGATTCTGTAGATGAGGACGTGAAGGATGAAATTTGGACAACCATCTTGCAAGTATGGGATGTTCCTAATTCTGGCGAACAACTAGAGACCATAAAAGTGGAGCTTACTCAACAAATTAGAGAGCAGTTGATGCAGGATTTGTCATCTATGGGTTTCTCTAAGAATTTCCCAGCTTCTTCTCCTAATACCACTGTGCCTGCGAGCCCGAAGGGTAATCACTCCATTGAGCCGCCTATACCAGAGGAGGATGAAATCCCAAAACAATGTGAACTGTATGTTGATAATTTAATTCATGCCGTGGCCTTTGGTAATGTTTACAAGTTAGGGCCCACCATACATAATCAACTGCTAGAAAATGATATGGTGAGGGTGGTGGTTAACGAGGTCCTAGATGCAAATGCTCCAGTGCCTATGCCCACAGATGAAGTGGAAACGGTTGGGCATGCTCTTAACAATTTCATTCAGTGGCCGAAAAGACTTGTGCAAATTATATCGGATAAGAATGCTGATGGATCTGCGGAAGAGGACCTTTCAGCCAAAAGGTTGGACCCTCAATTAGATTCCGTTCAACAATTGGTTTTAAAGGCAATGTGTATGTCAGAATCTATAAAGCTCGAATTGGAACACGACAGGATGAAGTTTCTCTGGCTCTCACAGAGAGATATTATGGAGTTGTGTATGGGTAAACAAGAGTTATCCATAACTATACTACGATTGTGGTTAACGTATTTGAGTCGCCCTTCTATTAATGTGGGTAAGAATGAGTTGTATGGATTTATTGATCCATGTTTTATTCAAAGTCCACATGATCCAACTAAAGCTGAAACCTACATACAGAATAAGTTATACGTTGATAAAAAAGAGTGTTACCTAGCTCCTTATCACAACAATCGTCATTGGCAATTGCTCATTATTTGTCCTAGGAAGAATCATGTAGTATTCCTATGTTCAAAGGAAAGAAAGCCAGATAACAATATTATTCACACTATAGATTCTGCTTTGGATGGATATCATAAGCTGCAAGGTGTTCAAAAGAAGAAGCCAACATGGAATGTCCCAGTCTGTCAAAGACAGTCTGGTAATTATGAGAGCGGCTACTATATTATGATACATATGTTGAACATTGTATCTGAAGGTATTATTGATCCATGGAAGAAGAAGGTATTTGGAAATTCGGAACCATTCCATGAGGATGAACTTATGAATGTTCGACAACATTTTTCTAGTTTTATTCTTGAGTATATTCTATAA 2292 0.4302 MKPLPRTRPSPSTGAEDGWSEEATFTLIDAWGKLYKTVNPKNFRQYHWKEVAKAVNDSHGFVRKARRTYDQCKSRINALKKKYATERARISDSSDYDDAWPFFDKINSIIGDVFPAKKLSPSPSPPFVTPVKASAWALAPVGRRSRTRPAPAITSASESLDESRFNRNLAAFAAAAAAAAAEEEIDESNFDNSDSDEWELSNESKKRKKGRNAMELGHREVASAAEKFSEIHGRVDASKQRKNVALEEQNMQFSKDSQRMQLRKTNHSKHMDDLSAHSQSGLDTQSTNRKRKRGPTQMKKLAVIDGQRIPIEFDQLTGKPSGENKTKFKSYLGFLSRSKISILPNEWDSVDEDVKDEIWTTILQVWDVPNSGEQLETIKVELTQQIREQLMQDLSSMGFSKNFPASSPNTTVPASPKGNHSIEPPIPEEDEIPKQCELYVDNLIHAVAFGNVYKLGPTIHNQLLENDMVRVVVNEVLDANAPVPMPTDEVETVGHALNNFIQWPKRLVQIISDKNADGSAEEDLSAKRLDPQLDSVQQLVLKAMCMSESIKLELEHDRMKFLWLSQRDIMELCMGKQELSITILRLWLTYLSRPSINVGKNELYGFIDPCFIQSPHDPTKAETYIQNKLYVDKKECYLAPYHNNRHWQLLIICPRKNHVVFLCSKERKPDNNIIHTIDSALDGYHKLQGVQKKKPTWNVPVCQRQSGNYESGYYIMIHMLNIVSEGIIDPWKKKVFGNSEPFHEDELMNVRQHFSSFILEYIL* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6349 763 Gene3D - 19 84 - -
Psa5g6349 763 Gene3D Adenoviral Proteinase; Chain A 545 760 - -
Psa5g6349 763 PANTHER OS10G0338966 PROTEIN-RELATED 371 712 - -
Psa5g6349 763 PANTHER OS10G0338966 PROTEIN-RELATED 236 372 - -
Psa5g6349 763 Coils Coil 62 89 - -
Psa5g6349 763 MobiDBLite consensus disorder prediction 263 296 - -
Psa5g6349 763 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 236 372 - -
Psa5g6349 763 PANTHER MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN 371 712 - -
Psa5g6349 763 MobiDBLite consensus disorder prediction 185 213 - -
Psa5g6349 763 SUPERFAMILY Cysteine proteinases 542 760 IPR038765 -
Psa5g6349 763 MobiDBLite consensus disorder prediction 198 213 - -
Psa5g6349 763 Pfam Myb/SANT-like DNA-binding domain 17 109 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6349 Psa-Chr5 538712855 538717904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6349 8 113 Trihelix Transcription Factor Family AT3G14180 44.340 2.14e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Psa5g6349 Myb_DNA-bind_4 4.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6349 - - mtr:MTR_2g092960 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6349 5 538712855 538717904 Psa5g6349 5 538712855 538717904 ECH