Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6348 ATGGTGGGTTTCAACTCTCAGTCGTCTTACGGTATGCAATCCATGCTCAAAGAAGGTCACAAGCATCTCTCCGGTCTCGACGAAGCCGTTCTCAAAAACACTGATGCCTGTAACCAACTCTCCATCATCGCTCGCACTTCCCTCGGCCCCAACGGGATGAATGAGATGGTTATAACTCATTTGGATAGACTTTTTGTGACGAACGATGCTGCTACGATTGTGAATGAACTTGAAGTTCAGCATCCTACTGCTAAGATTTTGGTGTTGGCCTCTTCTTCGTCTGAAACGTTTTTGATTGTGGAGAATCAACCATATTTAGTTGGTGGATACTGCCAACATGGATTGTTGAACGACCTAGAGCCTTCTGGCAGAGGAGTTTGCTCTAAATTCTTTTGTAGCGAGCAAAGGCTAAGAATGTCGGTGGTTGATTCTGCAGACAACATATTTAGTGTTCCTGAGAATTATAAGTACATGAAGGAAACCTGCCGGAAGCAGTTGGCATTTGGGAAATCAAGAATTCATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGTGGAGACATGGTGATTGAATATACCGGTGAACTTGTTAGACCTTCTATTGCTGATCGAAGAGAGCGTTTTATATACAATTCTTTAGTGGGTGCTGGAACATATTTGTTTCGGGTTGATGATGCAAGAGTCATTGATGCCACCAGAGCAGGAAGCATCACTCATTTAATTAATCATTCATGTGCACCAAATTGCTATTCAAGAGTCATTAGTGCTAACGGTGACGAGCATATTATAATATTTGCAAAGAGAGACATTATATTAGTCAGGTCTGTACATGGTTATGCGTTGAAGCATATGCACATATCACATGTGGAGATTGCAAATCAAATTATTCATACATATGCAAAATATGGGTATGTAGTGGATGCAAGGGTAGTCTTCAATAGGATGAGAACAAGGGACTTGGTTTCATGGACTTCGATGATGACAGGTTATATTTATCACGGCCACATTGACGAAGCCATAAATTTGTTTCGTCTGCTGCAAAAAGAAAATCTAAATATTGACTCTGTTACTCTAATTGGTCTCATTCAGGCATTATCCCAGCTTGGATGTCTAAGTTTTGTTAAAGAAGTTCACTGTTTCGGTTATCGATTTTTCCATGGTAATGAGCTCTCTGCAAATAATTCTCTTATTACTACGTATGCTAAGTCTGGAAAACTACATATGGCTAGAAACATATTTGAGCAAATGACAGAACTGTGTCTCACATCATGGCAAGGCTTGGTCCTGATGACTTGCGAATACAGGACGCTGCAGCTTGGTTTGAGTATTTTGGATCCAAGGCTTTTGAACAGCAAGAAGCTGATCGAAATGTTTGGTTCCTCCAAATTCCACAACAATGTATCGAAACCACATCTTGCAGCCACAGGCATCCTACAAAGTAGCGCTTCTGGTGCTGCCGGAGGGATTGGTCAGCCACTGGCACTTCTCATCAAGATGTCGCCTTTGGTTTCCGACCTGCATCTCTATGATATTGCGAATGTTAAGGGAGTTGCGGCTGATATTAGTCATTGCAACATGGGAGTTGCGGCTGATATTAGTCATTGCAACACTCCTTCAAAAGTTGTGGATTTCACAGGAGCTGCTGAGTTAGCCAATTATTTGAAAGGTGTGGATGTTGTTGTTATACCTGCTGGTGTTCCTAGGAAACCCGAGATGACTCGTCCTAAAGCCAAGTCGAAGAAAAAGGGCGGCGTCGTCGACTTCAAGAAAAGAAAGGTGAAGCTTGGGAGGAGATTGCCTCCACCTAAAAGTTCAACAAATACCGAAGTGAAATCTAAAGCAATTATTCTGCCGGAGCAGAGTGTGGCTGCTGATAAGGCAGGTTTGGCTGTAAACAAGAAGGGTTTGACTTTAAAAGAACTTCTTCAGCAAACATCTCATCATAATGCAAAAGTTCGAAGAGATGCATTGATGGTCATGGACGTCTTCACAAAAGCTGCTGAATACATGGAAATTCCAGTTCGAAGGACCCATGATGAACCTCTTCAAAAGCTTTTTATGTTGGTAAGGAGTGAGTTGAATCTAGACCTCAAGAACATTAAACAGGAACAAGCCAAGTTTTGGAAGCAACATCCTGCACCGGTTAAGACGGAGCTGTTTAGTTCAAGCTCAGTTGACTCGTGA 2187 0.4202 MVGFNSQSSYGMQSMLKEGHKHLSGLDEAVLKNTDACNQLSIIARTSLGPNGMNEMVITHLDRLFVTNDAATIVNELEVQHPTAKILVLASSSSETFLIVENQPYLVGGYCQHGLLNDLEPSGRGVCSKFFCSEQRLRMSVVDSADNIFSVPENYKYMKETCRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRRERFIYNSLVGAGTYLFRVDDARVIDATRAGSITHLINHSCAPNCYSRVISANGDEHIIIFAKRDIILVRSVHGYALKHMHISHVEIANQIIHTYAKYGYVVDARVVFNRMRTRDLVSWTSMMTGYIYHGHIDEAINLFRLLQKENLNIDSVTLIGLIQALSQLGCLSFVKEVHCFGYRFFHGNELSANNSLITTYAKSGKLHMARNIFEQMTELCLTSWQGLVLMTCEYRTLQLGLSILDPRLLNSKKLIEMFGSSKFHNNVSKPHLAATGILQSSASGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNMGVAADISHCNTPSKVVDFTGAAELANYLKGVDVVVIPAGVPRKPEMTRPKAKSKKKGGVVDFKKRKVKLGRRLPPPKSSTNTEVKSKAIILPEQSVAADKAGLAVNKKGLTLKELLQQTSHHNAKVRRDALMVMDVFTKAAEYMEIPVRRTHDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPAPVKTELFSSSSVDS* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6348 728 ProSitePatterns Chaperonins TCP-1 signature 2. 66 82 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g6348 728 Pfam SET domain 175 271 IPR001214 GO:0005515
Psa5g6348 728 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX2 88 281 - -
Psa5g6348 728 Pfam lactate/malate dehydrogenase, NAD binding domain 484 527 IPR001236 GO:0016491
Psa5g6348 728 PANTHER PHD FINGER PROTEINS 88 281 - -
Psa5g6348 728 Pfam TCP-1/cpn60 chaperonin family 41 94 IPR002423 GO:0005524
Psa5g6348 728 Gene3D Tetratricopeptide repeat domain 277 378 IPR011990 GO:0005515
Psa5g6348 728 ProSiteProfiles SET domain profile. 164 282 IPR001214 GO:0005515
Psa5g6348 728 SUPERFAMILY GroEL equatorial domain-like 22 95 IPR027413 -
Psa5g6348 728 PRINTS Tailless complex polypeptide 1 (chaperone) signature 42 58 IPR017998 GO:0140662
Psa5g6348 728 PRINTS Tailless complex polypeptide 1 (chaperone) signature 64 82 IPR017998 GO:0140662
Psa5g6348 728 CDD SET_SETD1-like 151 271 - -
Psa5g6348 728 SUPERFAMILY SET domain 134 271 IPR046341 -
Psa5g6348 728 Gene3D - 6 97 IPR027413 -
Psa5g6348 728 TIGRFAM PPR: pentatricopeptide repeat domain 322 355 IPR002885 -
Psa5g6348 728 TIGRFAM PPR: pentatricopeptide repeat domain 294 321 IPR002885 -
Psa5g6348 728 Gene3D - 482 589 - -
Psa5g6348 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Psa5g6348 728 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 485 587 IPR036291 -
Psa5g6348 728 SMART set_7 164 278 IPR001214 GO:0005515
Psa5g6348 728 Pfam PPR repeat 395 419 IPR002885 -
Psa5g6348 728 Pfam PPR repeat family 320 367 IPR002885 -
Psa5g6348 728 Gene3D SET domain 126 272 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6348 Psa-Chr5 538683252 538686436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6348 225 493 Glycoside Hydrolase AT3G49170 23.656 5.60e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa5g6348 SET 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6348 - - gmx:100806736 313.538