Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6322 ATGGAAATGGAGGATTTTACTTCAACCAGAATCAATGAGTATGGTTCTTCTTCTTCTCTTGTTTTGGATAGAGAAAGAGGAGAGCTTGTGGAAGCATCCGTGAAGCTGGAACGCAAAGGTGTTTCACCTGAGAGAACTATTGAAGCTTTGAAGAATCACAGTGAAGCTGAGAGGAGAAGAAGAGCAAGAATTAATTCACATCTTGATACCCTTCGTACCGTTATTCCAGGTGCTAATAAGTTGGACAAAGCATCTTTACTAGCTGAGGTTATTACACATTTGAAAGAGCTAAAAACAAATGCAGCACAAGCAAGTGAAGGACTAATGATTCCAAAAGACAATGATGAGATAAGAGTTGAATCACAAGAAGGTGGATTAAATGGTTTCCCTTATTCGATTAGAGCGTCACTATGTTGTGAATACAAACCAGGTTTATTGTCTGATATAAGACAAGCACTTGATGAACTTCATCTTATGATAATAAGGGCAGAGATTGCAACTTTAGGAGGTAGAATGAAGAATGTCTTTGTCATAATAAGCTGCAAAGAACAGAATTTCGAGGATGCCGAGTATCGACAGTTTCTCGCTGGATCGGTTCATCAAGCTCTTAGATCTGTTCTTGATAGATTTTCTGTTTCACAAGATATTATAGAAACTAGAAAGAGGAGGAGGATTTCTATATTCAGTTCTTCATCTTTAGGAGATTTCTTATAA 714 0.3739 MEMEDFTSTRINEYGSSSSLVLDRERGELVEASVKLERKGVSPERTIEALKNHSEAERRRRARINSHLDTLRTVIPGANKLDKASLLAEVITHLKELKTNAAQASEGLMIPKDNDEIRVESQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDELHLMIIRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALRSVLDRFSVSQDIIETRKRRRISIFSSSSLGDFL* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6322 237 Pfam Helix-loop-helix DNA-binding domain 52 97 IPR011598 GO:0046983
Psa5g6322 237 PANTHER TRANSCRIPTION FACTOR BHLH30 11 237 IPR045847 GO:0003700|GO:0006355
Psa5g6322 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 100 IPR036638 GO:0046983
Psa5g6322 237 SMART finulus 54 103 IPR011598 GO:0046983
Psa5g6322 237 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 237 - -
Psa5g6322 237 SUPERFAMILY ACT-like 136 213 IPR045865 -
Psa5g6322 237 Gene3D - 44 106 IPR036638 GO:0046983
Psa5g6322 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6322 Psa-Chr5 537251536 537253280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6322 35 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.286 1.89e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa5g6322 HLH 3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6322 - - lja:Lj3g3v2848980.1 386.726