Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6320 ATGAATGCGAGCCAGTTCGACGGTAACGCTGCCTTCTCCGGCGGTGGTTTCATGCCTCAGTCCACTCCGGTCTCCGACTCTCCCCTCACTCCCTCCAAGAATCGTGATACTCAGGCCTTGCTTCCTCTGACGATCAAGCAGATCAACGATGCACTCCAATCATGTGATGATAGAGCCAATCTGACTATTGTTGGTGTCGACGTTGGCACAATTTCTCTTGTTGGTAGAATTTGCAACAAATCTGAACATGTTACTGATGTTAAATTTGTACTTGATGATGGTACCGGAATGATTGAGTGCACTAAATGGCTTCAAGAGCCTGCAGATTCAATTCAAGTGGAGAGTATCTTGAATGGAATGTATGTGAGGGTTTATGGACATTTGAAAGGCTTTCAGGGTAAAAAAAACTTAAATGTTTTCTCTTTTAGGCCCGTGACTGACTTCAACGAGATTGCCCACCATTTCATTGATTGCATATATGTTCATCTATATAATTCGAAGTTACGGGCTAGCACCCCCAATCAGCACCATGCTCCTAATTCTACACAAATCACTCCCACGAAAGGTTATCAACCTCAAGTCATACCACCAAATCAATTCTCTGGTCAGCATAATGATGGTCAGAAGAGTGTTGAAGTATCGGTGTTAGATGTTTTGCATCTTCCTGCAAACAGGATAAAGGATGAGGGAACTAGTGTTGATGTTATCGCACAACTTGTTGGAATTCCCATGGATAAACTCATGCTGGCCATTAATAATCTCATCGGAGAAGGTGCCATATATGAAACTATGTCTAATAAGTATAAGTCAGCTGTCGACGGTTGA 825 0.4279 MNASQFDGNAAFSGGGFMPQSTPVSDSPLTPSKNRDTQALLPLTIKQINDALQSCDDRANLTIVGVDVGTISLVGRICNKSEHVTDVKFVLDDGTGMIECTKWLQEPADSIQVESILNGMYVRVYGHLKGFQGKKNLNVFSFRPVTDFNEIAHHFIDCIYVHLYNSKLRASTPNQHHAPNSTQITPTKGYQPQVIPPNQFSGQHNDGQKSVEVSVLDVLHLPANRIKDEGTSVDVIAQLVGIPMDKLMLAINNLIGEGAIYETMSNKYKSAVDG* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6320 274 PIRSF RPA32 2 272 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Psa5g6320 274 Pfam Replication protein A C terminal 162 264 IPR014892 -
Psa5g6320 274 SUPERFAMILY Nucleic acid-binding proteins 40 166 IPR012340 -
Psa5g6320 274 PANTHER REPLICATION PROTEIN A-RELATED 2 268 IPR040260 -
Psa5g6320 274 Gene3D - 204 272 IPR036388 -
Psa5g6320 274 CDD RPA2_DBD_D 70 163 - -
Psa5g6320 274 Pfam OB-fold nucleic acid binding domain 72 142 IPR004365 GO:0003676
Psa5g6320 274 Gene3D - 32 167 IPR012340 -
Psa5g6320 274 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 2 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6320 Psa-Chr5 537206469 537210903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6320 1 222 Core DNA Replication Machinery Family AT3G02920 48.472 2.48e-71 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6320 K10739 - gmx:100782819 350.903