Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6316 ATGAGTAATTTCAATGATGATCAAAACCATGATGATCATAATTATTATCCATTTGGAAATTTCTATCATGGATCAAGTCAAAGCAACTTCAACAAAAAAATCTTGTTAACCGCTATAGTTTCTTTGGTACTAGTATTGATTTTGGTCTTGGCTCTTCATCTCTACGCTAGGTATGTTCTCAAACGCCAAGCTCGCCGGAGAGCTGCCATTCATCAACTCAGCCTCACCGTCGCTCATGCTCACGTTCAATTCGCCGATCCATCAAACACCGGACTCGATCCAACGCTCATCGCCACTCTTCCCACTTTCCTCTTCAAACAAAAAGGAAAACAAGATGAAGAACAAAACAACAATATTGTTGAATGTGCAGTGTGTTTGAGTTTGTTAGAAGATGGAGAAATGATGAGGTTGCTTCCTAATTGTAAGCATAGTTTCCATGTAGGTTGTATCGATATGTGGTTGTCTTCGCATTCCACTTGTCCAATTTGTCGAACCAAGGTTGAACCGCGGCTCGAACCAGAAACACGCGAGGGTCCCACTTGGTTTAAACCATCGTCCGAAAGTACTTCAGATGGTGGTGGTTCGATTAATGAGTCCCCCAAGAATATTTCTCGATTGAGTTCTTTTCAAAGGATTCTTACCAGAGATAGATCTTCTAGAAGAATTCAACCTTCTAGTACGGCTCGTGTTGATATTATTATAGATCGTGATTTAGAGAGACAATAA 726 0.405 MSNFNDDQNHDDHNYYPFGNFYHGSSQSNFNKKILLTAIVSLVLVLILVLALHLYARYVLKRQARRRAAIHQLSLTVAHAHVQFADPSNTGLDPTLIATLPTFLFKQKGKQDEEQNNNIVECAVCLSLLEDGEMMRLLPNCKHSFHVGCIDMWLSSHSTCPICRTKVEPRLEPETREGPTWFKPSSESTSDGGGSINESPKNISRLSSFQRILTRDRSSRRIQPSSTARVDIIIDRDLERQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6316 241 CDD RING-H2_EL5_like 121 164 - -
Psa5g6316 241 PANTHER RING FINGER DOMAIN-CONTAINING 27 241 - -
Psa5g6316 241 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 27 241 - -
Psa5g6316 241 MobiDBLite consensus disorder prediction 181 203 - -
Psa5g6316 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 170 IPR013083 -
Psa5g6316 241 Pfam Ring finger domain 121 164 IPR001841 -
Psa5g6316 241 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Psa5g6316 241 MobiDBLite consensus disorder prediction 171 203 - -
Psa5g6316 241 SUPERFAMILY RING/U-box 107 170 - -
Psa5g6316 241 SMART ring_2 122 163 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6316 Psa-Chr5 537003857 537005295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6316 9 222 C3H Transcription Factor Family AT2G42360 44.783 4.08e-53 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6316 K19038 - gmx:100796057 224.942