Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6315 ATGGGAATGAAGAGTACTGGTGGAGAAATAGTTCAAGTTCAAGGAGGTCACATTGTTAGATCAACAGGTAGAAAAGATAGACATAGTAAGGTTTATACTGCGAAAGGCCCTCGCGATCGACGCGTTCGATTATCTGCGCACACCGCGATACAATTCTACGATGTTCAAGATCGGCTCGGCTATGATAGGCCGAGTAAAGCTGTTGACTGGCTTATCAAGAAGGCTAAGTCTGCTATTGATAAACTTGATGAGCTTCCTCCATGGAATCCAATTCAAAATGCAACAGAAGGGTTTCAAGAGGAGGAGGATAACAATAATGGTTTAGAAACAAGTTTCATGGTTAATAATTCGCCCGCGTCGTTTCTAGGCCAAGGTTCGGCCTTTTCCTCCCATAGGGGGACCCTTCAGTCCAGTTTTTCGCCATCGCTTCGTCCTTGGAATGATATTCCAATGGCGGATTCATCTGTCGATCATCATAATCAAAAATCTCATCAGCCTATTCACCACGGTTCGATATTTGGTAGCAGGTTTTTGTCTGATGCTTTGACAGGTTTCTGTATTCCTGCTAGAATTCAAGGAGAGGATGAGAACCACGGAGTTGGCTCGGAACAGCCATCGTCGTCTTCTAATTCTCATCATTAA 642 0.4408 MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDELPPWNPIQNATEGFQEEEDNNNGLETSFMVNNSPASFLGQGSAFSSHRGTLQSSFSPSLRPWNDIPMADSSVDHHNQKSHQPIHHGSIFGSRFLSDALTGFCIPARIQGEDENHGVGSEQPSSSSNSHH* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6315 213 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 106 IPR005333 GO:0003700
Psa5g6315 213 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 213 IPR005333 GO:0003700
Psa5g6315 213 PANTHER TRANSCRIPTION FACTOR TCP4 100 213 - -
Psa5g6315 213 PANTHER TRANSCRIPTION FACTOR TCP4 2 106 - -
Psa5g6315 213 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Psa5g6315 213 Pfam TCP family transcription factor 23 131 IPR017887 -
Psa5g6315 213 MobiDBLite consensus disorder prediction 199 213 - -
Psa5g6315 213 MobiDBLite consensus disorder prediction 1 29 - -
Psa5g6315 213 MobiDBLite consensus disorder prediction 193 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6315 Psa-Chr5 536962555 536964520 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6315 8 90 TCP Transcription Factor Family AT3G15030 91.566 5.17e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Psa5g6315 TCP 8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6315 - - gmx:100814907 194.126