Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6306 ATGGCTTCCACTCACAGAATCTGTAAACATGACGTGTTTCTCAGTTTCCGAGGCACTGACACTCGCAACACTTTCACCGATCATCTCTATCACCATCTTATCAAAAAAGGCATTTCCGTCTTCAAGGACGATCAAAATCTCCAGAAAGGAGAATCCATTTCACCGCAGCTTCTACAAGCAATTCGAGATTCAAGGGTTTCCATAGTTGTCTTCTCAAAAGCATATTCTAAATCAAAGTGGTGTTTGGATGAAATTGCTGATATCGCGGAATGCCACGAACAGTTGAAGCAAACTGCTATCCCCGTTTTCTACGACGTTGATCCATCTCATGTTCGAAAGCAGACTGGGGTTTTCAAAAGCGCGTTTGAATTATACACTAAATTGTTTAGATCTGACCTAGATAAGGTTGATCGATGGCGGAGAGCTCTCACTCATTTCGCCAATTTGGTTGGATTTGATGTTAGAGATAAGCCAGAGTTTACAGAGATTGAAAAAATTGTTCAGGCAGTCATAAAAGCATTGAATCATAAATTCTCAGGGTTTAGTAGTGATCTTGGGAACAGATCAATGTTAANAATTCAAAGAATCCTTGAGAAATCTCTAATTACCATTAAAAACCAGGAGATTCATATGCATGATATGTTACAAAAATTGGGCAAGAAAATCGTCCGACATCGATTTCCCGAAGAACCGGGATCATGGAGTAGATTATGGCAATACCATGATTTCTATCAAGTCTTGACAACAGAAACGGGAACAATCAATGTTAAAGCTATAGTTCTGGATCAAAAGGAAAGTTTCTCCAAATGCAGGGCTGAAGGATTTTCAAAAATGAGGAACCTTGCACTTCTCATATTGTATCATAACAACTTTTCAGGAAATTTGGATTTTCTTTCCAACAACTTGCGATATCTTTTGTGGCATGGATGCCCTTTTACTTCTTTGCCGTCAAATTTTGAGCCATATTATCTTGTGGAATTGAATATGCCTCATAGTAGCATTCAACGACTGTGGGAAGGTCGCAAGGAACTACCTAATTTGAAAAGGATGGATTTGGAGACTCCAAAGTCTTTTGGACCCCAAAAGTGGAGCGGATTAGATTTTACAGGACCCATAACTAATATTTTCTTATGTTTGCAAAACTGCAGCAGTTTGGTTGACCTTGATTTTGATTTAAGCTTTTGCAATCTTCATGAAGTACCAAATACTATTAAATGGTTATTCACGTTAGAAAGACTAAATCTACAAGGAAACAAATTGCGTTCACTACCTGATTGTTTTTACTTTCTTGCCAACCTAGCATATGTGAACTTATCTCATTGCCATGAGCTTAAAACTATTGAACTCGGCCTACCTCGAAAAAGTGTTTCTGGAGGAAAATATTTTAACATAGCAGCGGGATCTCGTGATCATAGGTCAGGACTTTATATATTTGACTGCCCTAAGTTCATGGTTAAATCCAAAAATCAATCCGTAGAATGTTCGTGGTTACAAAGACTACTTCTGAGTCCCCGTCACTTTCGGGGTGGCTTTGACATTGTTGTACCTTGTGATTGGAAAAACACTGTTTTTCCAGCAAGTAGTTGTATTCCAAGATGGTTCAATCACCAATTTGATGGCGGTTCAATAGTAAGGATAGTAGATTTTGATGAGTTTGACAAGAAGTTTGGCTTTGCCTTCTGTGTAGCATTTGAGGTAAGCAATCATCTTGGGAATTCTGGTTCTCCACAGGATTCATTTTCCTCAACACTCCCACATCCTTTATATCTTTCTTTTGAAAGTGAACACACAGAGGAACGCTTCGATATGCCACTTAATTTGGAACTGCACAAAATTGATGGCTGCAAATATCTTTGGCTAATTTATATCTCTCGAGAGCACTGCCATTTCTTAAAAACTGGAGCGCATATCACATTTAAAGCCTGCCCAGACACTGATGCGCCCCAACTTTTCTTTGATTATGTACAAAAAACCAGCATTAGGTCTGGAACTAAAATCCAACTTCCTTACAATTGGTTGGTCACTGAAAAGGAAGAAGTAAGGAAGAAGTTGAGAATTCTGGAGCCAAGTCAAAAGAAACTGATCTTTCCAATCTGGGCCTTTAGATATGCCAATCACAGCCAAAACGCACAACACGTTCTGTGA 2145 0.3879 MASTHRICKHDVFLSFRGTDTRNTFTDHLYHHLIKKGISVFKDDQNLQKGESISPQLLQAIRDSRVSIVVFSKAYSKSKWCLDEIADIAECHEQLKQTAIPVFYDVDPSHVRKQTGVFKSAFELYTKLFRSDLDKVDRWRRALTHFANLVGFDVRDKPEFTEIEKIVQAVIKALNHKFSGFSSDLGNRSMLXIQRILEKSLITIKNQEIHMHDMLQKLGKKIVRHRFPEEPGSWSRLWQYHDFYQVLTTETGTINVKAIVLDQKESFSKCRAEGFSKMRNLALLILYHNNFSGNLDFLSNNLRYLLWHGCPFTSLPSNFEPYYLVELNMPHSSIQRLWEGRKELPNLKRMDLETPKSFGPQKWSGLDFTGPITNIFLCLQNCSSLVDLDFDLSFCNLHEVPNTIKWLFTLERLNLQGNKLRSLPDCFYFLANLAYVNLSHCHELKTIELGLPRKSVSGGKYFNIAAGSRDHRSGLYIFDCPKFMVKSKNQSVECSWLQRLLLSPRHFRGGFDIVVPCDWKNTVFPASSCIPRWFNHQFDGGSIVRIVDFDEFDKKFGFAFCVAFEVSNHLGNSGSPQDSFSSTLPHPLYLSFESEHTEERFDMPLNLELHKIDGCKYLWLIYISREHCHFLKTGAHITFKACPDTDAPQLFFDYVQKTSIRSGTKIQLPYNWLVTEKEEVRKKLRILEPSQKKLIFPIWAFRYANHSQNAQHVL* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6306 714 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 152 IPR035897 -
Psa5g6306 714 ProSiteProfiles Leucine-rich repeat profile. 409 430 IPR001611 GO:0005515
Psa5g6306 714 Pfam TIR domain 9 177 IPR000157 GO:0007165
Psa5g6306 714 Pfam Leucine Rich Repeat 323 340 IPR011713 -
Psa5g6306 714 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 193 346 IPR044974 GO:0006952
Psa5g6306 714 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 7 178 IPR044974 GO:0006952
Psa5g6306 714 SUPERFAMILY RNI-like 267 499 - -
Psa5g6306 714 Gene3D - 4 180 IPR035897 -
Psa5g6306 714 ProSiteProfiles TIR domain profile. 8 174 IPR000157 GO:0007165
Psa5g6306 714 Gene3D Ribonuclease Inhibitor 186 468 IPR032675 -
Psa5g6306 714 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 193 346 - -
Psa5g6306 714 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 7 178 - -
Psa5g6306 714 SMART till_3 9 149 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6306 Psa-Chr5 536278675 536284248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6306 180 445 WRKY Transcription Factor Family AT4G12020 30.448 4.81e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6306 - - mtr:MTR_2g083510 479.944