Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6293 ATGGACAATAGAGAAATAATTTCAAATGGTTTACTTCATGAAAACATAACAAGTTCATCAAATGATAATCTTCCTGTTTTAAAGAGGAAGAGAAACCTCCCAGGAAATCCCGATCCTGAAGCTGAAGTGATATCTTTATCACCAAAAACATTGATGGCAACAAACAGATTTGTTTGTGAAATTTGTCTAAAGGGTTTTCAAAGGGATCAAAATCTTCAACTTCATCGACGCGGACATAACCTTCCTTGGAAGCTGAAACAAAGAACCAACAAAGAAGTAAGGAAGAGAGTGTATGTGTGTCCAGAGAAGACTTGTGTTCACAATCATCCTTCAAGGGCTTTGGGAGACTTAACTGGGATAAAGAAGCACTTTTGTAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGTTTTATGCTGTTCAATCGGATTGGAAAGCACATTCAAAGACTTGTGGTACTAGAGAATACAAATGTGACTGTGGCACTATCTTTTCAAGGAGGGATAGTTTTGTGACTCACAGGGCATTCTGTGAAGCCTTAACAGAAGAAACAGCTAGAATAAACGGATCAACAAACTCATTACTAGCAATGGGAGGTTACAACAACATCATGCAAAATTCTCTTGTCCCAGACATAGCCACTCATTTTCCTTCAATTTTCAAGCCAATTTCATGCACAGATCAAGCATCTAGGTCAGGTCTATCCCTTTGGATGTCTCAAACATCTCATGAGTTTCATGACACAATGGCTAATAATAATAGCAATTTGAATGAGATTCATCAACTTGAAAACCCACAACCACACTCTAATTATCATCTAAATTGGGTTTATGGAAATAAACTATCCTCTAATATTGGATCCCAAGAGTTAACTAGCACTGCTTCACTTCCACTGGTCAATAACAACAACAACATTGTTAAGGATAGTGCAAGTGCAAACAATCTTGTTAGTGTTCCTTCCTTATATAGCTCACAACACCAATCTCAGTCTCATAATCAAACAGCCTCAGCAAACATGTCAGCAACAGCTTTGTTACAAAAAGCTTCTCAGATTGGAACATCTTCAACTGATTCATTATTCCTTGGAAGTTTAGGACCTTTGAGATGCAATAGTCCTATTCAGGATCTTGGGGATAAATTTTGTGGGGTGTATGGTTCAAATTCAGTACTCACAACAAGCCATGAGACAGAAGCTAACTATTCAGGTGAATTGTCACAGATGCCCCCGACAAAACGACGACGCGTGCAGAATGAAGAGAGAGTGTGGGGACAAACTAGGGATTTCCTTGGTGTTGGTGGTGCTAATGCTAACCATTTGCATCCCTTCATCAATCAACGGATGGATTTGATTTGA 1365 0.3897 MDNREIISNGLLHENITSSSNDNLPVLKRKRNLPGNPDPEAEVISLSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKRVYVCPEKTCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKFYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFVTHRAFCEALTEETARINGSTNSLLAMGGYNNIMQNSLVPDIATHFPSIFKPISCTDQASRSGLSLWMSQTSHEFHDTMANNNSNLNEIHQLENPQPHSNYHLNWVYGNKLSSNIGSQELTSTASLPLVNNNNNIVKDSASANNLVSVPSLYSSQHQSQSHNQTASANMSATALLQKASQIGTSSTDSLFLGSLGPLRCNSPIQDLGDKFCGVYGSNSVLTTSHETEANYSGELSQMPPTKRRRVQNEERVWGQTRDFLGVGGANANHLHPFINQRMDLI* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6293 454 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Psa5g6293 454 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Psa5g6293 454 PANTHER F-BOX ASSOCIATED PROTEIN 21 453 - -
Psa5g6293 454 Gene3D Classic Zinc Finger 90 181 - -
Psa5g6293 454 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 453 - -
Psa5g6293 454 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6293 Psa-Chr5 535636319 535638930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6293 23 436 IDZ Gene Family AT1G03840 51.660 1.50e-135 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa5g6293 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6293 K25870 - gmx:100778666 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6293 5 535636319 535638930 Psa5g6293 5 535636319 535638930 ECH