Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g6291 ATGACTCAGTGTAGTTATCCTGAAGAGAATAATCACAGTGTTATTATGGAAAGACGCAAAGATAGCATAATCAGAACTTGTCCTACTTGTGGTCATCATATCAAATGCCAAGATCAGGGTGCTGGAATTCATGAGTTACCTGGATTACCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAAGTGAGGTCCGATATTCAAATGCTTCACCCTTTGATCGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGCACTCATCCAGAGAAGTTGCCAGGTGTAAGCAAAGATGGCTTGATCAGGCATTTCTTTCACAGGCCATCAAAAGCATACACAACAGGAACAAGAAAAAGGAGAAAAGTGCACACAGATTCAGATGGAAGTGAAACAAGGTGGCACAAAACAGGTAAGACAAGACCGGTTTACGTGATCGGCAAGTTAAAAGGATATAAGAAAATCCTTGTTCTTTACACTAACTACAGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTTATGCATCAATACCATCTTGGAAACAATGAAGAAGAGAAAGAAGGAGAATTGGTAGTTTCCAAAGTTTTCTACCAAACACAGCCAAGACAATGTGGTTCATTATTGAAAGACTCATCATCATTTTCTGATCAAAAAATAATCGGCGATCAAGTTGTTAATGAGGTGGTCAATCATAAAAACAGTGGATTTGTTGAATTTTATAATACATCTTTCATATCTTTTGATCAAGGGGAACAACATAGATCAAGCAATGCTCAAGTGATTTCTCATTTTCCTGTCCATGATGGTACTTCTTTCATCCCTTGA 855 0.3848 MTQCSYPEENNHSVIMERRKDSIIRTCPTCGHHIKCQDQGAGIHELPGLPAGVKFDPTDQEILEHLEAKVRSDIQMLHPLIDEFIPTLEGENGICCTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHTDSDGSETRWHKTGKTRPVYVIGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLLKDSSSFSDQKIIGDQVVNEVVNHKNSGFVEFYNTSFISFDQGEQHRSSNAQVISHFPVHDGTSFIP* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g6291 284 MobiDBLite consensus disorder prediction 122 144 - -
Psa5g6291 284 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 283 IPR044799 GO:0003700
Psa5g6291 284 ProSiteProfiles NAC domain profile. 49 208 IPR003441 GO:0003677|GO:0006355
Psa5g6291 284 MobiDBLite consensus disorder prediction 128 144 - -
Psa5g6291 284 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 283 - -
Psa5g6291 284 Gene3D NAC domain 58 212 IPR036093 GO:0003677|GO:0006355
Psa5g6291 284 SUPERFAMILY NAC domain 44 208 IPR036093 GO:0003677|GO:0006355
Psa5g6291 284 Pfam No apical meristem (NAM) protein 50 189 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g6291 Psa-Chr5 535599296 535603086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g6291 25 227 NAC Transcription Factor Family AT4G28500 77.941 3.64e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Psa5g6291 NAM 5.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g6291 - - gmx:100791648 508.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g6291 5 535599296 535603086 Psa5g6291 5 535599296 535603086 ECH